Retinoic acid protects human breast cancer cells against etoposide-induced apoptosis by NF-kappaB-dependent but cIAP2-independent mechanisms
© Jiménez-Lara et al; licensee BioMed Central Ltd. 2010
Received: 10 August 2009
Accepted: 26 January 2010
Published: 26 January 2010
Retinoids, through their cognate nuclear receptors, exert potent effects on cell growth, differentiation and apoptosis, and have significant promise for cancer therapy and chemoprevention. These ligands can determine the ultimate fate of target cells by stimulating or repressing gene expression directly, or indirectly through crosstalking with other signal transducers.
Using different breast cancer cell models, we show here that depending on the cellular context retinoids can signal either towards cell death or cell survival. Indeed, retinoids can induce the expression of pro-apoptotic (i.e. TRAIL, TNF-Related Apoptosis-Inducing Ligand, Apo2L/TNFSF10) and anti-apoptotic (i.e. cIAP2, inhibitor of apoptosis protein-2) genes. Promoter mapping, gel retardation and chromatin immunoprecipitation assays revealed that retinoids induce the expression of this gene mainly through crosstalk with NF-kappaB. Supporting this crosstalk, the activation of NF-kappaB by retinoids in T47D cells antagonizes the apoptosis triggered by the chemotherapeutic drugs etoposide, camptothecin or doxorubicin. Notably apoptosis induced by death ligands (i.e. TRAIL or antiFAS) is not antagonized by retinoids. That knockdown of cIAP2 expression by small interfering RNA does not alter the inhibition of etoposide-induced apoptosis by retinoids in T47D cells reveals that stimulation of cIAP2 expression is not the cause of their anti-apoptotic action. However, ectopic overexpression of a NF-kappaB repressor increases apoptosis by retinoids moderately and abrogates almost completely the retinoid-dependent inhibition of etoposide-induced apoptosis. Our data exclude cIAP2 and suggest that retinoids target other regulator(s) of the NF-kappaB signaling pathway to induce resistance to etoposide on certain breast cancer cells.
This study shows an important role for the NF-kappaB pathway in retinoic acid signaling and retinoic acid-mediated resistance to cancer therapy-mediated apoptosis in breast cancer cells, independently of cIAP2. Our data support the use of NF-kappaB pathway activation as a marker for screening that will help to develop novel retinoids, or retinoid-based combination therapies with improved efficacy.
The search for alternatives to, and adjuvants for chemotherapy of breast cancer to prolong survival after the development of chemoresistance or during chemotherapy constitutes an area of intensive research. In this respect the concept of "cancer differentiation therapy" has emerged as an approach that intends to force a tumor cell to acquire a less aggressive differentiated phenotype, concomitant with growth inhibition and ultimately to induce cell death upon terminal differentiation. It has been reported that retinoids exert cell-differentiating effects in a variety of cancer cells including breast cancer. Retinoids, derivatives of vitamin A, are ligands of the retinoid receptor subclass of the nuclear receptor superfamily, which comprises three retinoic acid receptors (RARα, -β, and -γ) and three retinoid-X-receptors (RXRα, -β, and -γ) which form RAR/RXR heterodimers that are believed to correspond to the in vivo mediators of the ligand-induced signaling and regulate a plethora of direct and indirect gene regulatory programs . Retinoids regulate important biological processes, such as embryo development, control and maintenance of organ homeostasis, and at the cellular level growth, differentiation and death [2, 3]. These properties make retinoids promising agents in cancer therapy and chemoprevention . Particularly, all-trans retinoic acid (atRA) is the prototypic "cancer differentiation therapy" of human acute promyelocytic leukemia (APL) that combined with anthracyclins cures 70-80% of patients . Several groups have reported that retinoid analogs with agonistic or antagonistic activity can inhibit the growth [6–9], induce apoptosis [10, 11] or cause differentiation of breast cancer cell lines [12, 13]. Other groups have noted the capacity of retinoids to inhibit mammary carcinogenesis in animal models [14–16]. Previous studies suggest that retinoids inhibit cell growth interfering with growth factor signaling pathways [17, 18].
The mammalian inhibitor of apoptosis proteins (IAPs), also known as baculovirus IAP repeat (BIR)-containing proteins (BIRCs), are evolutionary conserved proteins defined by their structural similarity. They share one to three copies of a well-conserved domain of about 70 aminoacids, named BIR. The first IAP was identified in baculovirus by its capacity to mediate host cell viability during infection [19, 20]. Accordingly, members of this family particularly cellular IAPs (cIAP1 and cIAP2) and the X-chromosome-linked IAP (XIAP) have been shown to be able to protect or delay cell death in response to apoptotic stimuli when overexpressed . IAPs have been demonstrated to inhibit cell death by directly repressing the proapoptotic activity of a family of cysteine proteases, caspases, as well as targeting proapoptotic components, such as Smac/DIABLO, for ubiquitin degradation [21–23]. IAP-deficient mice, although developing normally, revealed the importance of these proteins in survival, proliferation and some differentiation processes. Thus, NAIP, cIAP2 and XIAP have been shown to support survival of neurons , cardiomyocytes  or macrophages  under stress conditions. On the other hand, IAP proteins are highly expressed in many human malignancies and play a role in promoting tumorigenesis through inhibition of cell death and cooperation with other signaling pathways associated with malignancies [27, 28]. As such, cIAP1/2 were originally identified as TNFR2-associated proteins . Furthermore, cIAP1/2 and the closely related XIAP are targets of NF-κB signaling pathway [30–32]. The inducible transcription factor NF-κB plays an important role in numerous biological processes, such as proliferation and differentiation of many different systems, including neuronal cells, mammalian skin, myoblast, osteoclast, and the innate and adaptative immune systems [33–36]. Furthermore, NF-κB-deficient mice and cells suggest an important role for this transcription factor in cell survival [37, 38] and sensitivity of cancers to chemotherapy [39, 40]. Based on the observation that inhibition of the inducible transcription factor NF-κB, augments apoptosis mediated by TNF and other stimuli, it has long been claimed that upregulation of cIAP1/2, as NF-κB-target genes, is responsible for resistance to cell death induced by TNF and other stimuli .
Here, we report that retinoic acid-induced differentiation and apoptosis is accompanied by induction of pro-survival and pro-apoptotic gene expression programs in breast cancer cells. In studying the retinoid-activated survival gene programs we have put particular emphasis on the role of retinoid-induced NF-κB/cIAP2 signaling pathway(s) on the sensitivity of breast cancer cells towards chemotherapy. By comparing different breast cancer cell lines, we found that pretreatment with retinoic acid can antagonize chemotherapy-induced cell death in a cell- dependent manner, which correlates with the activation of NF-κB/cIAP2 signaling pathway(s). Our data exclude cIAP2 and suggest that other regulator(s) of the NF-κB signaling pathway are targeted by retinoic acid to confer resistance to chemotherapy-induced cell death.
9-cis-retinoic acid induces either differentiation or cell death in breast cancer cells in a cell-context dependent manner
In contrast to H3396, T47D cell growth was inhibited without loss of viability after 6 days of 1 μM 9-cis-RA treatment (Fig. 1A-B). Rather than inducing apoptosis, 9-cis-RA-treated T47D cells showed an increase in lipid droplet accumulation in the cytoplasm, demonstrated by Oil Red O staining and microscopic visualization, indicating differentiation of this cell line. T47D cells treated with 9-cis-RA look enlarged and the lipid droplets are disposed like a red perinuclear ring (Fig. 1G).
9-cis-RA induces the expression of cIAP2 in breast cancer cells in a cell context-dependent manner
9-cis-RA activates cIAP2 transcription through NF-κB response elements and induces in vivo recruitment of p65 and RAR to the cIAP2 promoter
To gain a deeper insight into the molecular mechanisms underlying 9-cis-RA induction of cIAP2 transcription, we performed chromatin immunoprecipitation (ChIP) assays to assess the in vivo recruitment of p65, RAR, RXRα and c-JUN to the cIAP2 promoter in untreated and 9-cis-RA-treated T47D cells. ChIP assays revealed that 9-cis-RA induced acetylation of histone H3 at the cIAP2 promoter, a hallmark of transcriptional activation. In addition, we could not detect basal occupancy of the cIAP2 promoter by p65, RAR or RXRα, but significant occupancy of the promoter by these transcription factors was observed after exposure of T47D cells to 9-cis-RA. In contrast with the results obtained with the cIAP2 promoter, p65 was not recruited to the RARβ gene promoter, a well-characterized retinoic acid-responsive gene, where we were able to detect basal and induced recruitment of RAR and RXRα (Fig. 4B, middle panel). Whereas binding of cJUN to the cIAP2 promoter in 9-cis-treated T47D chromatin extracts was not observed (Fig. 4B, upper panel), strong occupancy of the cJUN proximal promoter, used as a positive control, was easily detected (Fig. 4B, lower panel). Interestingly, this binding was reduced in 9-cis-RA-treated cells. Together, these data suggest that the recruitment of NF-κB factors and retinoic-acid receptors might be responsible for 9-cis-RA induction of cIAP2 gene transcription.
9-cis-RA pretreatment prevents apoptosis induced by chemotherapy drugs in T47D cells: correlation with the activation of NF-κB/cIAP2 signaling pathway(s)
Death of T47D and H3396 cells, in the absence or presence of 9-cis-RA pretreatment, was examined after exposure to various apoptogenic insults: anti-FAS, TRAIL, etoposide, doxorubicin and camptothecin. As observed above, the treatment with 9-cis-RA alone did not affect viability of T47D cells. However, 9-cis-RA pretreatment decreased sensitivity of T47D cells to doxorubicin, etoposide and camptothecin (Fig. 5B), suggesting that the activation of NF-κB/cIAP2 signaling pathway(s) by retinoids in these cells correlates with an increase in apoptosis resistance. On the other hand, in H3396 cells where 9-cis-RA induces neither NF-κB activation nor cIAP2 expression but makes the cells enter a fully apoptotic program, death curves showed that the treatment with 9-cis-RA not only induced apoptosis by itself, but also increased in an additive manner the apoptosis in response to TRAIL, etoposide, doxorubicin or camptothecin (Fig. 5B). Note that, 9-cis-RA treatment augmented apoptosis mediated by the death receptor pathway in both cell lines. These results reveal that the activation of NF-κB/cIAP2 signaling pathway(s) by retinoids in a given breast cancer cell apparently correlates with the ability of these retinoids to protect cells against chemotherapy-induced apoptosis.
We further investigated the effect of 9-cis-RA in preventing etoposide-mediated apoptosis in one additional breast cancer cell line, ZR-75-1, where the retinoid upregulates cIAP2 expression and potentially NF-κB activation (Fig. 2C, left panel). ZR-75-1 cells responded to 9-cis-RA in a similar manner to T47D cells showing a reduction in sensitivity to etoposide upon pretreatment with 9-cis-RA (see Additional file 1). These results show that the protection against etoposide-mediated cell death exerted by 9-cis-RA is not restricted to T47D breast cancer cells.
cIAP2 is not critically involved in the protection of etoposide-induced apoptosis by 9-cis-RA
Over-expression of the super-repressor of NF-κB activation, IκBα-SR(S32A/S36A), abrogates protection of etoposide induced apoptosis by 9-cis-RA
As a further control of the efficiency of NF-κB inactivation, we evaluated both the basal and 9-cis-RA-induced level of the NF-κB-dependent cIAP2 mRNA and protein in the IκBα mutant cell line by real time PCR and western blot, and found that cIAP2 levels were specifically down-regulated when compared to control cells (Fig. 7B-C). To evaluate the impact of IκBαSR(S32A/S36A) overexpression in 9-cis-RA protection against etoposide-mediated apoptosis, we compared by Western blotting, as a measurement of cell death, the level of activation of caspase-3 between T47D-vector cells and T47D-IκBαSR cells. While the level of cleaved caspase-3 was induced by etoposide in control cells and strongly abrogated when cells were pretreated with 9-cis-RA, overexpression of the IκBα mutant did not affect notably caspase-3 activation by etoposide, but restored very significantly the activation of cleaved caspase-3 by etoposide in the presence of 9-cis-RA (Fig. 7C).
We also compared the apoptosis induced by etoposide in the presence or absence of 9-cis-RA pretreatment in T47D-vector and T47D-IκBαSR cells by propidium iodide staining and FACS analysis. As seen in Fig. 7D, while pretreatment with 9-cis-RA inhibits etoposide-mediated cell death in T47D-vector cells, apoptosis was enhanced in T47D-IκBαSR cells treated with 9-cis-RA alone, and these cells were equally sensitive to etoposide in the presence and absence of 9-cis-RA, showing again the important role of the NF-κB pathway in the protection of 9-cis-RA against apoptosis. These data strongly support that this protection is mediated by NF-κB dependent mechanisms.
A complex and intricate network of signaling pathways determines whether a cell will either proliferate, differentiate, survive or die. Retinoids, due to their strong differentiative potential, have been widely used for both cancer therapy and cancer prevention . There are many examples in the literature of distinct cell types whose differentiation is under the control of retinoids: embryonal carcinoma cells, promyelocytic leukemia cells, neuroblastoma cells, normal erythroid progenitors, etc. [3, 44–48]. In addition to differentiation induction, retinoids are able to initiate several other programs that may contribute to its therapeutical potential. Indeed, it has been shown that retinoids induce apoptosis of APL cells and blasts of APL patients through selective paracrine action of the death ligand TRAIL . In breast cancer cells, we provide evidence that retinoic acid induces cell growth inhibition and depending on cell-context, promotes a sort of differentiation without affecting viability or makes the cells enter a fully apoptotic program. The finding that 9-cis-RA causes differentiation of T47D cells is in agreement with the previously reported accumulation of lipid droplets in cytoplasmic vesicles  and milk protein casein  in normal mammary epithelial cells, and in the breast cancer cell lines MCF7 and AU565  treated with retinoids. However, further studies are needed to determine whether the differentiation characterized by accumulation of cellular lipid depots contributes to the antiproliferative effects of retinoic acid in breast cancer cells.
A circuitry of several apoptotic programs is induced in breast cancer cells by retinoic acid. We have previously provided evidence that retinoids promote the induction of TRAIL not only in hematopoietic but also in breast cancer cells . In the current study, we have shown that induction of TRAIL and FAS by retinoic acid in the breast cancer cell line H3396 correlates with an increase in the number of apoptotic cells. In accordance with studies that report that TRAIL and FAS signal through caspase-8 activation, the activity of this enzyme is induced in H3396 cells treated with 9-cis-RA or with exogenous TRAIL. Although additional studies will be required to clarify the possible involvement of the extrinsic death pathway in retinoic-induced apoptosis in H3396 cells, activation of downstream caspases like caspase-9, as well as the release of cytochrome c and SMAC/DIABLO from the mitochondria to the cytosol and the loss of the mitochondrial membrane potential prove that the intrinsic pathway is dominantly involved in retinoic acid-induced apoptosis.
Paradoxically in certain breast cancer cells, retinoic acid induces concomitantly to TRAIL upregulation, the activation of a gene program of apparently opposite functionality, characterized by the induction of the antiapoptotic IAP family member, cIAP2, a NF-κB target gene. cIAP2 expression was significantly modulated at the mRNA and protein levels by retinoic acid in a cell context dependent manner. Using promoter mapping, promoter site-directed mutagenesis, EMSAs and chromatin immunoprecipitation analysis we show that retinoic acid induces the recruitment of NF-κB proteins to NF-κB binding sites in the proximal region of the cIAP2 promoter, thereby causing induction of cIAP2 expression. In agreement with our data, the induction of NF-κB proteins binding and activity by retinoic acid has been reported in several cell systems such as neuroblastoma or leukemia cells [49, 54, 55]. Importantly, in addition to NF-κB proteins, the retinoid receptors, RAR and RXR, are also recruited in vivo to the cIAP2 promoter upon retinoic acid treatment, despite the absence of bona fide RARE sites in this promoter by in silico analysis. Protein-protein interaction between p50/p65 and RXR that could contribute to stabilize the transcriptional activation complex have been described . Despite the finding that mutation of an AP-1 motif decreases 9-cis-RA inducibility, we could not detect in vivo recruitment of cJUN to the cIAP2 promoter in response to the retinoid. Although we cannot totally dismiss the possibility that cJUN takes part of the transcriptional complex induced by retinoic acid, other AP-1 binding factors could be recruited to the promoter. Importantly, although our data suggest that ligand-bound RAR/RXR may be recruited directly to the transcriptional activation complex we cannot discard that, in addition, retinoic acid induction of cIAP2 expression proceeds via regulatory circuits, which are likely to involve retinoic acid-target genes as well as cross-talk with other signaling pathways. Thus, as reported for neuroblastoma cells , retinoic acid could induce the activation in breast cancer cells of the phosphatidylinositol 3-Kinase/Akt signaling pathway that finally results in NF-κB activation.
Little is known about the anti-apoptotic potential of retinoic acid [58–61]. We provide evidence that in a cellular context, present in T47D, ZR-75-1 and SK-BR-3 cells, retinoic acid markedly upregulates cIAP2 expression. Retinoic acid significantly mitigates the apoptosis induced by chemotherapeutic agents in T47D and ZR-75-1 cells, while it is able to increase apoptosis by these compounds in H3396 cells where retinoic acid does not induce cIAP2 expression. Many antiapoptotic proteins, such as Bcl-2, Mcl-1 and Bcl-XL, have been shown to inhibit chemotherapeutic agent-induced apoptosis in diverse cell system models including hematopoietic and neuroblastoma cells. Additionally, it has been shown that the activation of genes encoding TRAF and IAP proteins by NF-κB serves to block apoptosis promoted by different insults including chemotherapy-induced apoptosis in different cell types [30, 32, 39, 62]. In particular, overexpression of cIAP2 inhibits etoposide-induced apoptosis, processing of caspase-3 and generation of caspase-like protease activity in 293T cells . Accordingly, it has also been shown that cIAP2 overexpression blocked etoposide-induced processing of caspase-3 and apoptosis in HT1080 cells under NF-κB-null conditions . Thus, cIAP2 emerged as a likely candidate to mediate the antiapoptotic effect of retinoic acid in our cell system. To test the involvement of cIAP2 in retinoic acid action, we performed siRNA studies to selectively suppress cIAP2 expression. Notably however, these studies did not show sensitization of T47D cells to etoposide-induced apoptosis in conditions of retinoic acid pretreatment, despite effective cIAP2 downregulation. These findings clearly demonstrated that cIAP2 is not necessary for retinoic acid protection of chemotherapy-induced apoptosis. However, we cannot rule out the possibility that compensatory expression of other members of the IAP family protein could supersede the absence of cIAP2 in our system, explaining the lack of effect of cIAP2 knockdown. Recent data also suggest that neither cIAP1 nor cIAP2 are able to inhibit caspases directly . Thus, these results and ours suggest a more complex role for cIAP2 in antiapoptosis than previously expected. Further studies are required to reveal the precise involvement of cIAP2 on retinoic acid effects in breast cancer cells.
It has been reported that the NF-κB signaling pathway plays a major role in cell survival  and in sensitivity of cancers to chemotherapy . In accordance with these observations, we have found that retinoic acid can activate the NF-κB signaling pathway in certain breast cancer cells, which correlates with the induction of resistance against apoptosis induced by cancer therapy agents, such as etoposide, doxorubicin or camptothecin. Furthermore, we have demonstrated that impairment of NF-κB activation results in a moderate increment of retinoic acid-induced apoptosis and in a similar sensitivity to etoposide in the presence and absence of 9-cis-RA. The multiplicity of mechanisms whereby NF-κB serves the antiapoptotic function is becoming increasingly complex. It has been reported that NF-κB increases the expression of several antioxidant effectors, such as glutathione cysteine synthetase, glutathione, manganese superoxide dismutase, hemeoxygenase, ferritin heavy chain and thioredoxin [65–69]. On the other hand, retinoic acid has been shown to reduce susceptibility to oxidative stress in chick embryonic neurons , in PC12 cells, and in mesangial cells , although the mechanism of the antioxidant effect of retinoic acid remains unclear. Furthermore, it has been reported that retinoic acid treatment represses ROS accumulation by a mechanism involving NF-κB in NB4 cells; in these studies, the impairment of NF-κB activation resulted in increased ROS levels and JNK activation in retinoic treated NB4 cells . Since etoposide induces marked biochemical alterations characteristic of oxidative stress, including enhanced lipid peroxidation and decreased levels of reduced glutathione, it will be of interest to determine the role of different antioxidant effectors in retinoic acid protection of etoposide-induced apoptosis. It is tempting to speculate that retinoic acid is able to regulate the sensitivity to chemotherapeutic agents-induced apoptosis by increasing antioxidant defense components through NF-κB proteins in certain cellular contexts such as T47D breast cancer cells.
This study illustrates the multiplicity of pathways induced by retinoids in breast cancer cells that can cause markedly different responses depending on the specific cellular context: retinoids can signal towards cell death or cell survival. Moreover, the results of this study support an important role for the NF-κB pathway in retinoic acid signaling and retinoic acid-mediated resistance to cancer therapy-mediated apoptosis in breast cancer cells, independently of cIAP2. Our data support the use of NF-κB pathway activation as a marker for screening that will help to develop novel retinoids, or retinoid-based combination therapies with improved efficacy. Additionally, this study further validates current efforts aimed to inhibit NF-κB signaling pathways to improve clinical therapies.
Cell culture and treatment
H3396, T47D, ZR75-1 cells were cultured in RPMI or Dulbecco in the case of SK-BR-3 cells, containing red phenol with 10% foetal calf serum, 100 U/ml penicillin, 100 U/ml streptomycin, and 2 mM glutamine. For the T47D cell line, medium was supplemented with 0,6 μg/ml insulin. 9-cis-RA and BMS493 were dissolved in ethanol and used at 1 × 10-6 M unless otherwise indicated. TRAIL (Tebu), TNFα (R&D, Minneapolis, Minnesota), antiFAS antibody (Tebu), Doxorubicin (Tebu), camptothecin (Sigma) and etoposide (Sigma) were used according to the supplier's instructions.
Measurement of apoptosis
Sub G1 cell-population was quantified by single staining (propidium iodide, PI) according to standard procedures. Briefly, the cells were trypsinized and 2,5 × 105 cells were washed with PBS 1× and incubated overnight at 4°C in a hypotonic buffer containing propidium iodide (0,1% Triton X-100, 0,1% sodium citrate and 50 μg/ml propidium iodide). DNA fragmentation assays were performed using the Cell Death Detection Elisa kit following the manufacturer's recommendations (Roche). This kit measures the enrichment of histone complexed DNA fragments (mono- and oligonucleosomes) in the cytoplasm of apoptotic cells.
Oil Red O staining
Cells, grown in coverslips, were fixed with cold 10% Formalin Calcium Acetate for 30 min. After fixation, coverslips were transferred to 60% isopropanol for 1-2 minutes at room temperature (RT). Cells were stained with freshly filtered Oil Red O for 20 min at RT and washed in running water to remove the excess of the staining solution, followed by counterstaining with hematoxylin. The coverslips were then mounted in glycerin jelly.
RNase protection assays
Total RNA was extracted with Trizol (Gibco BRL). RNase protection assays were performed according to the supplier's instructions (Pharmingen). Routinely, 4 μg total RNA and 6-8 × 105 cpm of (α-32P) uridine triphosphate probe sets were used and after RNase treatment, protected probes were resolved on 5% urea-polyacrylamide-bis-acrylamide gels.
T47D cells (3 × 106 cells per condition) and H3396 cells (2 × 106 cells) were collected in PBS, centrifuged and resuspended in 200 μl of ice-cold fractionation buffer (0.025% digitonin, 250 mM sucrose, 5 mM Mg Cl2, 10 mM KCl, 1 mM EDTA, 1 mM EGTA, 1 mM PMSF, 20 mM HEPES, pH 7.4 and protease inhibitors) and incubated on ice for 10 minutes. Cell permeabilization was determined by Trypan-blue staining. Cells were then centrifuged at 13,000 rpm and 4°C for 2 minutes. The supernatant containing the cytoplasmic fraction was then isolated from the pellet containing the mitochondrial fraction. The pellet was resuspended in 200 μl RIPA buffer containing 150 mM NaCl, 1% NP-40, 0.5% deoxycholate, 0.1% SDS, 50 mM Tris HCl, pH8 and incubated for 30 minutes on ice. Samples were centrifuged for 10 minutes at 13,000 rpm and 4°C. Release of mitochondrial proteins to the cytosol was assessed by SDS-PAGE gels and Western blotting.
Measurement of mitochondrial membrane potential
Mitochondrial membrane potential was measured by using the fluorescent dye DiOC6 (3, 30 dihexyloxacarbocyanine iodide) (Sigma) according to the manufacturer's instructions. Briefly, after treatment with retinoids, cells were incubated with 50 nM of DiOC6 at 37°C during 30 minutes. Cells were then washed with PBS and trypsinized. Cells were centrifuged, washed twice with PBS, resuspended in PBS containing 2 μg/ml of propidium iodide and analyzed by FACS.
Caspase -3, -8, -9, cleaved PARP (Cell Signaling), anti-SMAC (BD Pharmingen), anti-cytochrome c (BD PharMingen) and β-actin (Santa Cruz) antibodies were used to probe blots of extracts prepared using RIPA buffer (20 mM Tris, pH 7.5, 25 mM β-glycerophosphate, 2 mM EDTA, 140 mM NaCl, 1% Triton X-100, 0.1% SDS, 1% sodium deoxycholate, 1 mM PMSF, 1 mM sodium orthovanadate, 2 mM sodium pyrophosphate and protease inhibitors cocktail). cIAP2 (R&D Systems, batch AF817 and AF8171) antibodies were used to probe blots of extracts prepared using Triton Lysis buffer (TLB; 10 mM Tris, pH 7.4, 137 mM NaCl, 2 mM EDTA, 1% Triton X-100, 25 mM β-glycerophosphate, 1 mM sodium orthovanadate, 2 mM sodium pyrophosphate, 10% glycerol, 1 mM PMSF, and protease inhibitors cocktail). Immune complexes were detected by chemiluminescence (Amersham).
A 1.4 kb fragment corresponding to the 5'-flanking region of cIAP2 gene was amplified by PCR from human genomic DNA and cloned in XhoI and NcoI of the basic luciferase reporter plasmid pGL3-Luc. A series of 5'deletions of this fragment were amplified by PCR using different forward primers containing a XhoI site at their 5' -end and a common reverse primer containing a NcoI site at its 5'-end. PCR-amplified DNA fragments were digested with XhoI and NcoI restriction enzymes, gel purified and inserted into the respective sites in pGL3-Luc vector. Site-directed mutagenesis of the cIAP2 promoter was performed using QuickChange Site-Directed Mutagenesis kit (Stratagene) following manufacturer instructions. Nucleotide sequences were determined by automatic DNA sequencer. Information about primer sequences is available upon request. pSG5-IκBαSR plasmid was constructed by inserting the human cDNA coding for a constitutively activated form of IκBα containing S32A and S36A mutations from the retroviral plasmid pLxSN-IκBαSR(S32A/S36A) into EcoRI sites of pSG5 .
Transfection and luciferase assays
Transfections were performed using FuGENE transfection reagent (Roche) following manufacturer instructions. Briefly, 100 ng of luciferase reporter plasmid were transfected along with 30 ng of pCMV-β-galactoside and 100 ng of different expression vectors in 60-70% confluent cells seeded in 24-well plates. 16 hours after transfection, cells were treated for 24 h with 9 cis-retinoic acid at the indicated concentrations. Lysates from transfected cells were analyzed for luciferase and β-galactosidase activity, and data from luciferase activity were normalized by β-galactosidase activity values.
Electrophoretic mobility shift assays
Nuclear extracts of T47D cells treated with 1 μM 9-cis-RA acid were prepared as described by Dignam et al. . Oligonucleotide probes corresponding to the NF-κB binding site-1 (sense, 5'-ATGGAAATCCCCGA-3' and antisense, 5'-TCGGGGATTTCCAT-3') and NF-κB binding site-3 (sense, 5'-GCTGGAGTTCCCCT-3' and antisense, 5'-AGGGGAACTCCAGC-3') were radiolabeled using T4 polynucleotide kinase in the presence of (γ-32 P) ATP. Radiolabeled double strand oligonucleotides were mixed with 10 μg of nuclear protein extracts in a final volume of 20 μl of binding buffer (20 mM HEPES, pH 7.9, 60 mM KCl, 1 mM Mg Cl2, 20 mM EDTA, 0.5 mM dithiothreitol, 10% glycerol) containing 2 μg poly (dI.dC). After 30 minutes of incubation at room temperature, binding complexes were separated on a 5% non-denaturating polyacrylamide gel with 0.5× TBE buffer. The gel was vacuum dried and subjected to autoradiography. For supershift experiments, 0.2 μg of p65 antibody (Santa Cruz) was added to the samples before addition of the radiolabeled oligonucleotide.
T47D breast cancer cells were seeded 24 h prior to transfection with 100 nM siGENOME SMARTpool for cIAP2 (Dharmacon, Thermo) using DharmaFECT-1 as transfection reagent according to manufacturer's instructions. After 16 h, siRNA-lipid complexes were removed and cells were treated with 9-cis-RA for 30 h prior to etoposide treatment.
T47D breast cancer cells growing in p150 dishes were treated with 1 μM 9-cis-RA for 48 h. Media and ligands were renewed 45 min before chromatin extracts were prepared. ChIP assays were performed according to a previously described procedure [73, 74]. Sonication was performed using a Bioruptor UCD-200TM from Diagenode (20 min, high intensity, 30 second on/off interval). Chromatin complexes were incubated with primary rabbit polyclonal antibodies to acetylated H3 histone (06-599, Upstate), RelA/p65 (06-418, Upstate), RAR (M-454, sc-773X), RXRα (D-20, sc553), c-jun (H79, sc-1694X) or normal rabbit serum immunoglobulins (sc-2027). Eluted DNA from the ChIP assays were assayed directly by real-time PCR. DNA inputs were diluted 1:100 previous to real time PCR assay. 1 μl of template was used per 25 μl reaction, all samples were analysed in duplicate using SYBR-green 2× PCR Master Mix (Roche) on a Stratagene Mx3005P real-time PCR thermal cycler. After an initial denaturation and activation incubation of 10 min, 45 cycles of 2-step cycling were performed with an annealing temperature of 60°C with the following primers: forward 5'-AAAGTGTATGGCGGATGGAGG-3' and reverse 5'CGGCATTTACTGAAAGACATTTGC-3' to amplify the cIAP2 promoter region -364/-218; forward 5'-CTCTCTGGCTGTCTGCTTTTGC-3' and reverse 5'-GTGAACTTTCGGTGAACCCTACC-3' to amplify the RARE-containing RARβ2 promoter region (-166/-35); and forward 5'-GCAGCGGAGCATTACCTCATC-3' and reverse primer 5'-CAGTCAACCCCTAAAAATAGCCC-3' to amplify the cJUN promoter region containing the AP1 site (-130/+31). Melting curves were performed to verify product specificity. Relative fold induction over IgG for each immunoprecipitate was assessed by analysing the change in threshold cycle number (delta Ct) upon normalization to their respective inputs.
Reverse-Transcriptase Polymerase Reaction
Total RNA was isolated using Tri-Reagent (Sigma) and 1 μg of RNA was used in a reverse transcription reaction as instructed using iScript cDNA synthesis kit from Bio-RAD. Quantitative PCR was performed using equal amounts of cDNA with the following primers: cIAP2 mRNA 5'-AGCTGAAGCTGTGTTATATGAGC-3' (forward) and 5'-ACTGTACCCTTGATTGTACTCCT-3' (reverse) and β-actin mRNA 5'-AACTCCATCATGAAGTGTGACG-3' (forward) 5'-GATCCACATCTGCTGGAAGG-3' (reverse).
Student's t test was performed using the Microsoft Excell software (version 11.5.4). The statistical significance of difference between groups was expressed by asterisks (*, 0.01 <P < 0.05; **, 0.001 <P < 0.01; ***, P < 0.001).
We thank M. Lieb and F-J. Li for technical assistance and M.J. Birrer for providing the dominant-negative version of c-jun (TAM67). We also thank A.R. Bernardo for support on FACS experiments during revision of this article and M.J. Latasa for support and input on the chromatin immunoprecipitation assays. This work was supported by funds from the MICINN (SAF2007-63634 and BFU2004-3465), Fundación Médica Mutua Automovilística de Madrid (2005X0584), Fondo de Investigaciones Sanitarias (RD06/0020/0036), the Association for International Cancer Research (AICR 00-108), the Ligue National Contre le Cancer (laboratoire labelisé), and the European Community contracts QLK3-CT2002-02029, LSHC-CT-2005-518417 "Epitron", HEALTH-F4-2007-200767 "Apo-Sys" and FP-018652 "CRESCENDO". A.M. J-L. is a recipient of a grant from the Spanish MICINN (Ramon y Cajal Program).
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