Breast carcinoma cells re-express E-cadherin during mesenchymal to epithelial reverting transition
- Yvonne L Chao†1,
- Christopher R Shepard†1 and
- Alan Wells1Email author
© Chao et al; licensee BioMed Central Ltd. 2010
Received: 9 February 2010
Accepted: 7 July 2010
Published: 7 July 2010
Epithelial to mesenchymal transition (EMT), implicated as a mechanism for tumor dissemination, is marked by loss of E-cadherin, disruption of cell adhesion, and induction of cell motility and invasion. In most intraductal breast carcinomas E-cadherin is regulated epigenetically via methylation of the promoter. E-cadherin expression is therefore dynamic and open to modulation by the microenvironment. In addition, it has been observed that metastatic foci commonly appear more differentiated than the primary tumor, suggesting that cancer cells may further undergo a mesenchymal to epithelial reverting transition (MErT) in the secondary organ environment following the EMT that allows for escape.
We first examined E-cadherin expression in primary breast tumors and their corresponding metastases to liver, lung and brain and discovered that 62% (10/16) of cases showed increased E-cadherin expression in the metastases compared to the primaries. These observations led to the question of whether the positive metastatic foci arose from expansion of E-cadherin-positive cells or from MErT of originally E-cadherin-negative disseminated cells. Thus, we aimed to determine whether it was possible for the mesenchymal-like MDA-MB-231 breast cancer cells to undergo an MErT through the re-expression of E-cadherin, either through exogenous introduction or induction by the microenvironment. Ectopic expression of full-length E-cadherin in MDA-MB-231 cells resulted in a morphological and functional reversion of the epithelial phenotype, with even just the cytosolic domain of E-cadherin yielding a partial phenotype. Introduction of MDA-MB-231 cells or primary explants into a secondary organ environment simulated by a hepatocyte coculture system induced E-cadherin re-expression through passive loss of methylation of the promoter. Furthermore, detection of E-cadherin-positive metastatic foci following the spontaneous metastasis of MDA-MB-231 cells injected into the mammary fat pad of mice suggests that this re-expression is functional.
Our clinical observations and experimental data indicate that the secondary organ microenvironment can induce the re-expression of E-cadherin and consequently MErT. This phenotypic change is reflected in altered cell behavior and thus may be a critical step in cell survival at metastatic sites.
Breast cancer is the most frequently diagnosed cancer in women, and it is the second leading cause of cancer death in women of all ages . Intraductal carcinoma, which originates from the epithelial cells lining the mammary ducts, is the most common type of breast cancer. Metastasis occurs via a series of sequential steps, during which the cells acquire an amoeboid-like phenotype, become motile, disseminate, and colonize distant sites of the body, which in breast cancer are most commonly liver, lung, bone, and brain. The stages of this transformation are similar to the stages of the developmental process known as epithelial to mesenchymal transition (EMT) . Much of the current literature supports the idea that EMT is the key mechanism by which tumor cells gain invasive and metastatic ability, as EMT enables separation of individual cells from the primary tumor mass as well as promotes migration [3, 4]. After undergoing EMT, thereby enabling access to hematogenous or lymphatic routes of dissemination, tumor cells can extravasate into secondary organs and establish micrometastases. We have hypothesized that EMT is reversible and that a reversion back towards the epithelial phenotype may occur at the secondary metastatic site (MErT). A similar reversion occurs in development when neural crest cells undergo a transient EMT followed by a permanent MET to generate tissues such as kidney epithelia . A few studies have charted switches between EMT and MET phenotypes throughout malignant progression such as in colorectal cancer , bladder cancer , and ovarian cancer . The phenotypic plasticity observed in these cases is unlikely to be generated by the acquisition of permanent genetic insults, suggesting that the microenvironment is capable of inducing epigenetic changes.
Numerous extracellular signals such as growth factors and stromal signals, and stressors such as hypoxia and ROS have been implicated in the induction of EMT . However, at the core of the transition between an epithelial and a mesenchymal phenotype is the loss of E-cadherin expression. E-cadherin is a classical member of the cadherin family, whose extracellular domain facilitates homotypic intercellular adhesions while the cytosolic tail assembles catenins and other signaling and scaffolding molecules at the membrane to link to the actin cytoskeleton [10, 11]. E-cadherin-mediated cell-cell adhesions limit cell motility and establish apical-basal polarity. The loss of E-cadherin expression and disassembly of E-cadherin adhesion plaques on the cell surface enables tumor cells to disengage from the primary mass and move to conduits of dissemination . This duality of functionalities--intercellular cohesion and regulation of intracellular signaling cascades--suggests that E-cadherin may impact multiple aspects of epithelial homeostasis.
Thus, E-cadherin expression is intimately connected to a cell's degree of epitheliality - in both morphology and migratory and invasive abilities. In cancer pathogenesis, E-cadherin expression is dynamically regulated via epigenetic mechanisms, specifically methylation of the promoter, providing tumor cells the plasticity to switch between EMT and MErT depending on the microenvironment . Interestingly, it has been observed that metastases often resemble the epithelial-like phenotype of the primary tumor rather than the mesenchymal phenotype observed at the invasive front. In addition, several pathological studies, including the one conducted herein, have observed increased E-cadherin expression in metastases compared to aberrant or loss of expression in the primary tumors, further challenging the notion that EMT is irreversible and suggesting that E-cadherin may be involved in MErT at the metastatic site [14, 15]. However, one limitation of these pathological studies is that it is impossible to determine whether these E-cadherin-positive metastases result from the rare escape and expansion of epitheloid carcinoma cells, such as in the cell cooperativity model, or whether they arise from a mesenchymal-like cell that has undergone a phenotypic reversion back to a more differentiated phenotype, as we hypothesize [16, 17].
Therefore, we aimed to experimentally determine whether it was possible for the mesenchymal-like MDA-MB-231 breast cancer cells to undergo an MErT through the re-expression of E-cadherin, either through exogenous introduction or through induction by the microenvironment. Ectopic expression of E-cadherin in MDA-MB-231 cells resulted in a reversion back to some degree of the epithelial phenotype, particularly with respect to morphology and functional suppression of migration and invasion. Furthermore, introduction of breast cancer cells and primary explants into a secondary organ environment led to the passive loss of methylation of the E-cadherin promoter and re-expression of this cell-cell adhesion molecule, demonstrating a mechanism for this reversion of EMT. In vivo experiments in mice revealed similar results in lung metastases, suggesting that re-expression of E-cadherin may be a critical step in metastatic colonization of not only the liver but lung as well.
E-cadherin is expressed in distant metastases of E-cadherin-negative primary tumors
Of interest, E-cadherin expression in the metastases did not appear to be random. Shown is a liver metastasis demonstrating increased expression at the hepatocyte-cancer cell interface and decreased expression centrally, suggesting that E-cadherin is directly regulated by hepatocyte interactions (Figure 1c). Quantification of staining intensity confirmed an increase in E-cadherin expression in the area outlined by the solid inset compared to the area outlined by the dashed inset located further away from hepatocytes (Figure 1d). E-cadherin staining in the tissue samples is observed both at the membrane and in the cytoplasm, as autocrine EGFR signaling generally present in breast cancer drives E-cadherin internalization [19, 20]. This overview of a small number of paired specimens provides insights into whether MErT is possible. If metastases are the result of expansion of a clonal population of cells originating from a primary tumor cell that has undergone EMT, then one would expect metastases to be E-cadherin-negative unless this phenotype is plastic. The finding of E-cadherin-positive metastases suggests that non-EMT cells can establish metastases or that MErT at the metastatic site can occur.
Ectopic expression of E-cadherin partly reverts breast cancer cells towards an epithelial phenotype
We next analyzed the expression of epithelial and mesenchymal markers in the various cell lines to monitor the penetrance of the epithelial/mesenchymal phenotypes. We evaluated the expression of a spectrum of cytokeratins including cytokeratin-18 (CK-18), the primary intermediate filament present in epithelial cells. Expression of vimentin, smooth muscle actin, and fibronectin were used as markers of the mesenchymal phenotype. Loss of cytokeratins and increased expression of vimentin, smooth muscle actin, or fibronectin have been shown to occur concurrently with EMT in adenocarcinomas . The survey of these epithelial and mesenchymal markers revealed that 231-Ecad cells demonstrated decreased expression of smooth muscle actin, fibronectin, and vimentin and increased expression of cytokeratins (Figures 2b and 2c). Upregulation of N-cadherin has been observed in EMT, but because N-cadherin is not expressed in MDA-MB-231 cells this mesenchymal marker was not tested. 231-Ecad cells displayed increased cytokeratin-18 and decreased vimentin expression as assayed by immunofluorescence (Figure 2c). As epithelial and mesenchymal cells also differ in their cytosketelal architecture, phalloidin was used to visualize the actin cytoskeleton. Expression of the entire E-cadherin molecule (231-Ecad) provided a more epithelial-like reticular actin filament meshwork (Figure 2c). The persistence of mesenchymal markers and failure to fully express epithelial markers in 231-Ecad cells compared to the epithelial MCF7 cells suggests that MDA-MB-231 cells transfected with E-cadherin (either wild-type or cytosolic tail) still maintain some aspects of mesenchymal phenotype.
In summary, these results indicate that expression of exogenous E-cadherin (wild-type or cytosolic tail) in MDA-MB-231 cells results in a morphological shift toward the epithelial end of the spectrum. The expression of both epithelial and mesenchymal markers in 231-Ecad and 231-H2kd cells demonstrate that these cells may not have undergone a complete MErT, but the migration and invasion assay data suggest that expression of the full-length and cytosolic domains of E-cadherin are sufficient to induce a more epithelial-like phenotype in terms of cell motility and invasiveness. Furthermore, suppression of invasion and migration in 231-H2kd was comparable to the suppression in 231-Ecad cells, indicating that changes to the localization of key signaling proteins during the mesenchymal to epithelial transition can have profound effects in mitigating the mesenchymal nature of an invasive cell.
E-cadherin expression is induced by a secondary organ microenvironment
E-cadherin re-expression in the liver microenvironment is due to loss of promoter methylation
Because cancer cells are often globally hypomethylated, we evaluated whether the loss of methylation was specific to the E-cadherin promoter or the result of global hypomethylation. The H19 gene is a paternally imprinted gene whose methylation is modulated during gametogenesis and does not change after terminal differentiation of a cell line . We performed bisulfite MS-PCR analysis on MDA-MB-231 cells before coculture and following 1,3, and 6 days of coculture with hepatocytes, examining a previously reported CpG site of H19. Evaluation of the data revealed that the average methylation of H19 remained unchanged at all time points indicating that global hypomethylation is not responsible for the changes observed at the E-cadherin promoter (Figure 9b).
Loss of promoter methylation can result from either a passive mechanism (lack of maintenance methylation subsequent to mitosis) or an active mechanism (enzyme-mediated excision), though there are currently no well-defined demethylases. The presence of intermediate stages of promoter methylation on day 3 and extended time period to unmethylated status (6 days) suggested a passive mechanism. To test whether the loss of methylation was dependent on proliferation of the cancer cells, we inhibited proliferation of the cancer cells with mitomycin-C. This treatment completely prevented loss of methylation of the promoter as demonstrated by MS-PCR (Figure 9c). Furthermore, addition of mitomycin-C also prevented re-expression of E-cadherin at the protein level (Figure 9d). Inhibition of DNA methyltransferases, which mediate CpG island methylation, could also account for loss of methylation. However, immunostaining for DNA methyltransferase DNMT1 showed neither decrease in expression nor change in nuclear localization (Figure 9e). Taken together, these data point to passive loss of methylation as the mechanism by which E-cadherin is re-expressed.
E-cadherin re-expression occurs in vivo
Paget's seed and soil hypothesis has long postulated that cancer cells, or the "seeds", will only grow in a specific microenvironment, or "soil" [24, 29–31]. Indeed, despite the fact that tumors are continually shedding cells, very few circulating tumor cells actually establish metastases, suggesting that post-extravasation survival is a crucial rate-limiting step . The clinical observations that breast cancer displays a characteristic pattern of metastasis, specifically to the lung, liver, bone, and brain, indicate that these organs provide the most conducive microenvironment for metastatic growth. In addition, cancer cells themselves may exhibit an inherent gene signature predisposing them to homing to a particular organ site [14, 18]. The precise environmental factors that enable the organotropism of metastases are yet to be fully discovered, but even less well known is why only a tiny fraction of circulating carcinoma cells form metastases.
Prior to extravasation, cancer cells must survive through invasion and emigration, anchorage-independent dissemination, and extravasation into the ectopic organ. These behaviors are thought to be conferred by molecular changes as a result of EMT. However, post-extravasation, cancer cells encounter a new set of challenges, notably integration within organ parenchyma and establishment of blood supply, which mesenchymal-like cells appear poorly equipped to handle. Despite the importance of EMT in promoting metastatic progression, there is mounting evidence that EMT is not an irreversible switch in cancer cell phenotype. Analysis of primary tumors and their corresponding metastases reveal that even though an EMT may have occurred to engender metastases, the phenotypes of the two can be strikingly similar. E-cadherin expression has been detected in lymph node and non-nodal metastases in carcinomas not limited to breast . Re-expression of adhesion molecules could therefore be one way in which the secondary organ microenvironment promotes survival of metastatic cells as cadherin-cadherin engagement promotes activation of cell survival signaling pathways .
To ascertain whether these earlier reports of E-cadherin-expressing metastases held for intraductal breast carcinomas, we surveyed a small set of matched primary and metastatic tumors. Some 2/3 of metastases to the lung, liver, or brain expressed increased E-cadherin compared to the primary tumors, which largely exhibited aberrantly low to negative E-cadherin expression. Not all metastases exhibited high levels of E-cadherin expression, which is not surprising as metastases are known to evolve and give rise to further disseminations, suggesting that a second EMT may occur within more aggressive nodules.
Interestingly, E-cadherin expression even within metastases was heterogeneous, with increased E-cadherin expression seemingly correlated with proximity to normal parenchymal cells. This heterogeneity suggests that constant interaction with hepatocytes in liver may be necessary. Still, despite these observations, it was possible that these E-cadherin-positive tumor cells disseminated from the primary tumor as epithelioid cells and formed secondary metastatic lesions. Thus, we sought to provide proof-of-principle that cancer cells could be engineered to approach a mesenchymal-to-epithelial reverting transition by altering E-cadherin expression, either exogenously or via the microenvironment. We first hypothesized that we could engineer a MErT in MDA-MB-231 cells by expressing wild-type E-cadherin or by sequestering the E-cadherin-associated catenins with a non-binding E-cadherin construct. After transfecting the MDA-MB-231 cells with the cytosolic domain of E-cadherin linked to the MHC external domain, we saw that the dominant negative protein sequestered α-, β- and p120-catenins. The advantage of using this dominant negative is that the catenin signaling could be parsed from other activities of the extracellular domain of E-cadherin including cell adhesion through trans-ligation and EGFR cis-modulation [23, 34, 35]. While neither construct could completely revert MDA-MB-231 cells to an epithelial phenotype, expression of either construct resulted in morphological transformations and behavioral changes noted as suppression of migration and invasion. Our results also corroborate the findings of other studies focusing on the role of E-cadherin as a tumor or invasion suppressor [36–38].
When cultured in a hepatic microenvironment, MDA-MB-231 exhibited a similar reversion to an epithelial phenotype, both in morphology and E-cadherin re-expression. The nature of the signals that drive the reversion back to an epithelioid phenotype are not known and likely to be complex. Initial studies found that neither conditioned media nor hepatocyte-derived matrix could trigger E-cadherin re-expression in this breast carcinoma line, though the combination of the two was noted to lead to a weak re-expression of E-cadherin (data not shown). Re-expression secondary to loss of methylation of the E-cadherin promoter was also observed in the cell line MDA-MB-435 (Additional file 3), which is now considered to be a melanoma derivative, but is nonetheless useful as this neurectodermal lineage expresses E-cadherin as melanocytes but loses expression during melanoma progression . Furthermore, this reversion is not likely unique to the liver microenvironement, based on the findings in human metastases and in our in vivo mouse model. Recently, we have found that lung parenchymal cells can drive E-cadherin expression in prostate tumor cells . A recent study suggests that laminin-1 may be one component of the extracellular matrix that contributes to E-cadherin re-expression . One key difference between our studies is the microenvironment used to induce E-cadherin re-expression in MDA-MB-231 cells. While Benton et al used a three-dimensional laminin-1 hydrogel, we chose to simulate a secondary organ microenvironment by culturing breast cancer cells with hepatocytes, thereby exposing them to hepatocyte-derived soluble factors and extracellular matrix. Their finding of DNMT1 downregulation as the mechanism for E-cadherin expression was not observed in our system (data not shown), suggesting that tissue architecture may induce MErT by alternative mechanisms. Thus, the search for this signaling 'cocktail' is likely to be complex and lies beyond the scope of the present communication.
That E-cadherin re-expression is caused by loss of methylation suggests a functional mechanism by which the microenvironment modulates the mesenchymal to epithelial phenotypic switch. E-cadherin is predominantly downregulated in carcinomas at the post-translational and/or transcriptional levels. Regulation of E-cadherin is therefore unique among tumor suppressors in which loss or mutation appears to be the rule, but this epigenetic regulation of E-cadherin allows for increased phenotypic plasticity. We have previously reported that prostate cancer cells cultured with hepatocytes also re-express E-cadherin, but as a result of inhibition of the EGF receptor signaling [24, 35, 41, 42]. However, in breast cancers E-cadherin is silenced directly at the transcriptional level by promoter hypermethylation or indirectly through its transcriptional suppressors Snail, Slug, and Twist . No differences in expression of these transcriptional suppressors were observed following hepatocyte coculture (data not shown). In MDA-MB-231 cells, representative of the basal subtype of infiltrating ductal carcinomas, the CpG islands in the promoter region most proximal to the E-cadherin initiation site are fully methylated, which exerts a profound effect on mesenchymal nature. Demethylation of these islands by the chemical agent 5-aza-deoxycytidine causes re-expression of E-cadherin and loss of invasive ability [44–47]. Coculturing of MDA-MB-231 cells with primary hepatocytes resulted in loss of methylation of the E-cadherin promoter and expression of E-cadherin mRNA and protein. We observed that the loss of methylation was dependent on the proliferation of the cancer cells. This finding was not unique to the breast carcinoma cells, as the MDA-MB-435 line also demonstrated loss of promoter hypermethylation upon coculturing with hepatocytes. Importantly, this loss of methylation was at least semi-specific and not global as the imprinted H19 gene remained methylated. The ubiquitous transcription factor Sp1 has been implicated in the regulation of methylation status by binding loci of hemimethylated DNA, protecting sequences from de novo methylation, preferential demethylation, or passive demethylation mechanisms . Sp1 was necessary for loss of methylation in coculture (data not shown), strongly suggesting active signaling from the microenvironment.
The foundation of our findings rest on the epigenetic reversion observed when breast cancer cells are cocultured with primary hepatocytes. The epigenetic status of the primary tumor and disseminated metastases is most likely important, since primary tumors that have high E-cadherin levels have very little systemic disease [31, 49], suggesting that the epigenetic reversion at distant secondary sites is also relevant. The xenograft model in which E-cadherin negative MDA-MB-231 cells formed E-cadherin-negative primary tumors in the mammary fat pads but E-cadherin-positive micrometastases and the finding that at least some E-cadherin-negative primary breast carcinoma cells can re-express this molecule support the idea that this reversion is possible. Furthermore, the xenograft experiment demonstrates that the molecular changes can occur in the secondary site. However, these experiments do not mean that all E-cadherin-positive metastases necessarily arise from the reversion of E-cadherin-negative cancer cells. Further molecular dissections and a much larger breast tumor survey, challenging due to the paucity of matched primary and non-nodal metastases, are needed to determine the extent of this MErT in early metastatic seeding.
The potential implications of E-cadherin re-expression and MErT are many. There are several possible outcomes or combinations of outcomes after a cell extravasates into a metastatic target tissue: apoptosis, dormancy, or sustained proliferation, with the latter appearing the rarest . While E-cadherin typically mediates homotypic cell-cell adhesions, heterophilic ligation between different cell types has been documented [51–53]. Cancer cell adhesion has been shown to facilitate extravasation and colonization of distant organs [54, 55]. Phenotypic reversion to epitheliality in vivo may therefore enhance the integration and survival of cancer cells at the metastatic site by cloaking the cancer cell with epithelioid-like characteristics, or may act to transmit mitogenic signals. E-cadherin expression has also been shown to suppress cell growth, which may account for the dormancy period between clinical presentation of metastases . However, preliminary results in a parallel study reveal that one important survival advantage conferred by E-cadherin expression is increased resistance to cell death induced by chemotherapeutic agents such as camptothecin, doxorubicin, and taxol (data not shown). Cellular adhesion has long been implicated in intrinsic or acquired resistance of solid tumors to multiple anticancer therapeutics not restricted to chemotherapy [57, 58]. The addition of E-cadherin function blocking antibodies sensitizes multicellular spheroids to treatment with various chemotherapeutic agents and E-cadherin-positive cells are more resistant to staurosporine-induced cell death than E-cadherin-negative breast cancer cells . A similar survival advantage may be conferred when disseminated cells face apoptotic cytokines, thus providing a selective pressure that then confounds adjuvant therapies. The finding that E-cadherin re-expression and catenin sequestration can contribute to a MErT suggests that they may be appropriate therapeutic targets for preventing the establishment of metastases in breast cancer.
Materials and methods
Generation of cell lines
231-H2kd cells were generated using the Myc/His encoding H-2kd-E-cad dominant negative E-cadherin construct, a kind gift from Vizirianakis et al . 231-H2kd cells were selected by FACS using the H-2kd (SF1-1.1) antibody (BD Pharmingen; San Jose, CA) and were maintained in 900 μg/ml G418 until used for experimentation. 231-Ecad cells were made by co-transfecting a plasmid encoding the E-cadherin full-length cDNA sequence (Open Biosystems) with the pcDNA 3.1 plasmid (Invitrogen) and cultured in 900 μg/ml G418 to select for stable transfectants. 231-shEcad cells were generated using an E-cadherin shRNA plasmid (Santa Cruz Biotechnology) and stable transfectants were selected using 5 ug/ml of puromycin and confirmed by RT-PCR. At least two single cell clones of each mutant were generated by selecting for resistance to G418 (231-H2kd and 231-Ecad) or puromycin (231-shEcad). Control clones transfected with pcDNA 3.1, DsRed2, and control shRNA were also generated and tested. Single cell clones of each mutant line were subsequently transfected with the DsRed2 plasmid vector and FACS sorted for RFP fluorescence for use in hepatocyte cocultures. In all cases the experiments were performed at least once with the different clones, rendering similar results.
Cell culture and co-culture
MCF7, MDA-MB-231, and MDA-MB-435 cells were cultured in RPMI-1640 with 10% FBS as previously described . Primary rat hepatocytes were isolated by collagenase perfusion and cultured as described previously  and plated onto collagen-coated 6-well plates at 60,000 cells/cm2. The following day, cancer cells were seeded onto the hepatocyte monolayer at 3,000 cells/cm2 and cocultured for 6 days.
Paraffin-embedded patient samples were obtained from Magee Womens Hospital. Sections underwent antigen retrieval in citrate solution and were incubated with E-cadherin primary antibody (Cell Signaling). Antigen staining was performed using DAB (Vector Laboratories) then counterstained with Mayer's hematoxylin. Secondary antibody alone served as a negative control and adjacent normal tissue served as an internal positive control. Images of three randomly-selected microscope fields of each sample were taken and the percentage of E-cadherin positive cancer cells was quantified as the number of E-cadherin positive cells over the total number of cancer cells in that image. Microscope fields shown were selected to account for the heterogeneity of each sample. Relative staining intensity of the liver metastasis was quantified using ImageJ software.
Invasive potential was determined in vitro by migration through an artificial ECM . 2.5 × 104 cells were challenged in growth-factor reduced matrigel invasion chambers (BD Biosciences). Cells were seeded into the top chamber with serum-free media and media containing 10% serum was added to the lower chamber for the remainder of the assay. After 24 hours, the remaining cells and ECM in the top chamber were removed by cotton swab. Cells that invaded through the matrix to the bottom of the filter were then fixed and stained with DAPI and counted. Individual experiments were performed in triplicate.
A monolayer of cells was grown to confluence in a 6-well plate and at experimental time zero a scratch was made in each well using a pipette tip. The well was imaged at time zero and again 24 hours later. Using Metamorph, a measurement was taken for how much the denuded area had filled in the 24-hour period.
The Institutional Animal Care and Use Committee at the Veterans Affairs Hospital in Pittsburgh approved all animal procedures. Experiments were performed in 8 week old female athymic nude mice. One million MDA-MB-231 cells were injected into the right mammary fat pad; injection vehicle was the culture medium (0.2 mL/site). Mice were sacrificed 4-5 weeks after tumor cell implantation and the primary xenograft and lungs removed.
Xenograft and other harvested tissues were fixed in 4% buffered formalin and 4 μm thick paraffin sections underwent antigen retrieval for 5 min in 95°C 10 mM citrate solution in preparation for H&E and immunochemistry. With the use of the Mouse on Mouse Kit (Vector Labs, Berlingame, CA), positive labeling was confirmed by comparing serial sections incubated with the primary human-specific E-cadherin antibody (67A4 1:100; Santa Cruz Biotechnology, Santa Cruz, CA) or the biotinylated secondary antibody alone. Labeling was visualized with the Vectastain Elite kit (Vector Labs).
Methylation Specific PCR and bisulfite sequencing
DNA was isolated from co-culture using the DNeasy Blood and Tissue Kit (Qiagen, Velencia, CA). 2000 ng of isolated DNA was subjected to bisulfite treatment using the EZ DNA Methylation Gold Kit (Zymo, San Diego, CA) per the manufacturer's specifications. MSP was performed in the way of Corn et al  or using the CpG WIZ E-cadherin Amplification Kit per the manufacturer's instructions (Millipore, Temecula, CA). Briefly, in the method of Corn, a nested PCR method was used, in which the first primer set generated a 270 bp fragment that was subsequently sequenced. The second round of PCR used either nested primers that were specific to either the unmethylated or methylated allele, which amplified the first CpG island after the transcription start site. The product size of the methylated reaction was 112 bp and 120 bp for the unmethylated.
MSP of H19 after bisulfite conversion was performed using the following primers: F 5'-TTA TAA AAT CGA AAA TTA CGC GCG A-3' R 5'-TTT TAG ATG ATT TTT GTG AAT TTT-3'. Cycling conditions were 95°C for 15 min, 35 cycles of 94°C for 1 min, 55°C for 1 min, and 72°C for 1 min with a final extension of 5 min at 72°C. All reactions were performed using Platinum Taq SuperMix (Invitrogen).
Real-time quantitative PCR
RNA was isolated from hepatocyte-cancer cell co-cultures with the PureYield RNA Midiprep System (Promega, Madison, WI). cDNA was obtained with High Capacity cDNA RT Kit (Applied BioSystems, Foster City, CA). The human-specific TaqMan Gene Expression Assay Hs00170423_A1 CDHI probe was obtained from Applied Biosystems (Foster City, CA). Amplification and analysis in quadruplicate was run in an Applied Biosystems 7500 Real-Time PCR System. Relative values were normalized by using GAPDH levels as a reference using TaqMan Pre-Developed Human GAPDH Assay Reagent by Applied Biosystems.
Immunoblotting, Immunofluorescence, and Flow Cytometry
Cell lysate proteins were resolved on 7.5% SDS-PAGE and and transferred to PVDF membranes. After blocking, membranes were incubated with primary antibodies against E-cdherin (Santa Cruz), pan cytokeratin (abcam), smooth muscle actin (Cal Biochem), fibronectin (Rockland Inc), GAPDH (Sigma) and actin (Sigma), followed by incubation with peroxidase-conjugated secondary antibodies and chemiluminescence detection.
For flow cytometry, co-cultures were non-ezymatically dissociated from the culture plates and vortexed into a single-cell suspension. The cells were fixed in 2% Paraformaldehyde for 30 minutes, permeabilized with 1% Triton for 3 minutes, and incubated with a PE-conjugated E-cadherin antibody (67A4) for 30 minutes. The mixed hepatocyte-cancer cell suspension was gated as to exclude hepatocytes using the appropriate SSC/FSC parameters. Data were collected on at least 106 cells in the appropriate SSC/FSC region.
Immunofluorescence was performed by overnight primary antibody incubation with E-cadherin (Santa Cruz), DNMT1 (Santa Cruz), DsRed (Santa Cruz), Alexa 488-phalloidin (Molecular Probes), cytokeratin-18 (abcam) or vimentin (abcam) followed by incubation with the appropriate fluorophore-labeled secondary antibody. Visualization was performed on an Olympus Fluoview 1000 confocal microscope (Olympus, Center Valley, PA).
Polyclonal primary human tumor explants were obtained and cultured as previously reported . Immunofluorescence labeling was performed as above.
All quantitative data are presented as mean ± sd obtained from independent experiments. p-value significance was determined using a two-tailed unpaired Student t-test, and set at 0.05 as a minimum. All images were representative of at least three independent observations.
We thank Ioannis Vizirianakis for the H-2kd-Ecad construct and Steve Strom, William Bowen, and Liang Kang for providing hepatocytes. These studies were supported by grants from the DoD CDMRP on Breast Carcinoma Cancer and the VA Merit Award Program.
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