Deletion or insertion in the first immunoglobulin-plexin-transcription (IPT) domain differentially regulates expression and tumorigenic activities of RON receptor Tyrosine Kinase
© Ma et al; licensee BioMed Central Ltd. 2010
Received: 15 October 2010
Accepted: 29 November 2010
Published: 29 November 2010
Activation of the RON receptor tyrosine kinase, a member of the c-MET family, regulates tumorigenic phenotypes. The RON extracellular domains are critical in regulating these activities. The objective of this study was to determine the role of the first IPT domain in regulating RON-mediated tumorigenic activities and the underlying mechanisms.
Two RON variants, RON160 and RONE5/6in with deletion and insertion in the first IPT domain, respectively, were molecularly cloned. RON160 was a splicing variant generated by deletion of 109 amino acids encoded by exons 5 and 6. In contrast, RONE5/6in was derived from a transcript with an insertion of 20 amino acids between exons 5 and 6. Both RON160 and RONE5/6in were proteolytically matured into two-chain receptor and expressed on the cell surface. RON160 was constitutively active with tyrosine phosphorylation. However, activation of RONE5/6in required ligand stimulation. Deletion resulted in the resistance of RON160 to proteolytic digestion by cell associated trypsin-like enzymes. RON160 also resisted anti-RON antibody-induced receptor internalization. These features contributed to sustained intracellular signaling cascades. On the other hand, RONE5/6in was highly susceptible to protease digestion, which led to formation of a truncated variant known as RONp110. RONE5/6in also underwent rapid internalization upon anti-RON antibody treatment, which led to signaling attenuation. Although ligand-induced activation of RONE5/6in partially caused epithelial to mesenchymal transition (EMT), it was RON160 that showed cell-transforming activities in cell focus formation and anchorage-independent growth. RON160-mediated EMT is also associated with increased motile/invasive activity.
Alterations in the first IPT domain in extracellular region differentially regulate RON mediated tumorigenic activities. Deletion of the first IPT results in formation of oncogenic variant RON160. Enhanced degradation and internalization with attenuated signaling cascades could be the mechanisms underlying non-tumorigenic features of RONE5/6in.
The RON (recepteur d'origine nantais) receptor tyrosine kinase belongs to the MET proto-oncogene family [1, 2], which plays a critical role in epithelial cell homeostasis and tumorigenic development . Expression of RON has been found mainly in cells of epithelial origin although certain tissue macrophages and immune cells also express the RON mRNA and protein [4–6]. Accumulated evidences have indicated that aberrant RON expression, characterized by protein overexpression and generation of various variants, contributes to pathogenesis of epithelial cancers [7, 8]. Immunohistochemical staining has demonstrated that RON is overexpressed in more than 40% of primary cancer samples from breast, colon, and pancreatic tissues [4, 9–11]. Increased RON expression has also been considered as a validated prognostic factor for predicting disease progression and survival rate in certain cancer patients [10, 12]. Although RON gene mutations were not found in primary cancer samples, aberrant splicing resulting in formation of various tumorigenic RON variants is frequently observed in primary colon, breast, and brain tumors [7, 13, 14]. Functional analysis has revealed that RON activation promotes malignant phenotype of cancer cells . In tumor cells overexpressing RON, cells undergo epithelial to mesenchymal transition (EMT) featured by spindle-like morphology, diminished E-cadherin expression, and increased vimentin expression [15, 16]. EMT is a unique phenotype observed in cancer stem cells and is a critical process required for cancer metastasis . Evidence has also indicated that altered RON expression results in increased survival and pro-apoptotic activity of tumor cells [18, 19]. These activities of RON help to sustain tumor growth under hostile environment such as hypoxia [3, 19, 20]. Recent studies further demonstrate that abnormality in RON expression contributes to acquired resistance of cancer cells to conventional chemotherapeutics . We have recently observed that down-regulation of RON expression under chronic hypoxia is a mechanism contributing to the insensitivity of tumor cells towards small molecule inhibitor-induced inhibitory or cytotoxic activities . Clearly, aberrant RON expression is a pathogenic factor contributing to cancer development and malignant progression. Such abnormality also provides the molecular basis of targeting RON for potential therapeutic intervention .
As described above, aberrant RON expression is featured by generation of biologically active RON variants [7, 13, 14]. Currently, seven RON variants including RON170, RON165, RON160, RON155, RONp110, RON85, and RON52 have been identified in primary cancer samples and in established cell lines [7, 14, 24]. One of the tumorigenic variants is RON160, which is constitutively active and has oncogenic activities in vivo. RON160 is produced by a RON mRNA transcript through alternative splicing that eliminates 109 amino acids in the RON extracellular domain . These amino acids are encoded by exons 5 and 6, which constitute the first IPT domain in the RON β-chain . The β-chain extracellular sequences harbor a cluster of four IPT units between sema and transmembrane segment [25–27]. The first IPT unit contains 103 amino acids (from Pro569 to Asp671) and is featured by immunoglobulin-like fold . The functions of the second and third IPT units are currently unknown. The fourth IPT unit is critically important in regulating RON protein maturation and cell surface expression [28, 29]. Currently, the mechanism of how the deletion of the first IPT domain resulting in oncogenic conversion is largely unknown. It is reasoned that the deletion causes RON conformational change and leads to spontaneous dimerization, which causes constitutive receptor phosphorylation and increased intracellular signaling activation .
The purpose of the present work is to determine the role of the first IPT unit in the RON extracellular sequences in regulating RON-mediated tumorigenic activities in epithelial cells. By studying two RON variants formed either by deletion of 109 amino acids coded by exons 5 and 6 or by insertion of 20 amino acids between exons 5 and 6, we observed striking differences in biochemical and biological properties. Clearly, deletion or insertion induced alterations in the first IPT domain have different biological consequences, which may have pathogenic implications in regulating RON-mediated activities.
Materials and methods
Cell Lines and Reagents
Human colon (HT-29, SW620, and SW837), breast (HCC-1937, MDA-MB231, T-47D, ZR-751, and MCF-7), and pancreatic (BxPc-3, L3.6pl, and Panc-1) cancer cell lines and NIH3T3 cells were from ATCC (Manassas, VA). Madin Darby canine kidney (MDCK) cells stably expressing RON or RON160 (M-RON or M-RON160 cells) were established as previously described . Human MSP was provided by Dr. E. J. Leonard (National Cancer Institute, Bethesda, MD). Mouse monoclonal antibodies (mAb) specific to the RON extracellular sequences (clones Zt/g4 and Zt/c1) were used as preciously described . Rabbit IgG antibody specific to RON C-terminal peptide was described previously . Recombinant human furin was from New England BioLabs (Ipswich, MA). PD98059 (PD), SB203580 (SB) and wortmannin (WT) were from Calbiochem (San Diego, CA). Mouse mAb specific to phospho-tyrosine (PY-100), phospho-Erk1/2, AKT, and other signaling proteins were from Cell Signaling (Danvers, MA). Rabbit or goat IgG antibodies specific to E-cadherin, vimentin, or β-actin were from BD Transduction Laboratories (Lexington, KY).
Reverse Transcription (RT)-Polymerase chain reaction (PCR) and DNA sequencing
RT-PCR was performed as previously described . Briefly, total RNA was isolated from individual cell lines using Trizol (Invitrogen, CA). RT was carried out using 2 μg of total RNA with a SuperScript Preamplification kit (Invitrogen). PCR was conducted by using a pair of oligomers to amplify RON160 or RONE5/6in cDNA fragments . Amplified cDNA fragments were subcloned into the pGEM-T-easy vector (Promega) and sequenced at the Texas Tech University DNA Sequence Core facility (Lubbock, TX).
Construction of the full-length RONE5/6in cDNA and its expression in MDCK cells
The complete RONE5/6in cDNA was constructed by replacing a fragment in the wild-type RON cDNA with an amplified 0.6 Kb fragment to create the full-length RONE5/6in cDNA as previously described . Transfection of MDCK cells with RONE5/6in, selection of stable cell lines, and Western blot analysis of protein expression were conducted as previously described .
Immunoprecipitation and Western blot analysis
These methods were performed as detailed previously [31, 32]. Cellular proteins (250 μg/sample) were used for immunoprecipitation by Zt/g4 (2 μg/sample) coupled to protein G Sepharose beads. Individual proteins were detected using specific antibodies in Western blot analysis under reduced conditions. Membranes were also reprobed with rabbit IgG antibody to β-actin to ensure equal sample loading [31, 32].
Immunofluorescent cell surface analysis
Fluorescent cell surface analysis was carried out as previously described . Briefly, M-RON, M-RON160 or M-RONE5/6in cells (1 × 106 cells/ml) were incubated with Zt/g4 (1 μg/sample/ml) followed by goat anti-mouse IgG coupled with FITC. Fluorescent intensity was determined by FACscan (Becton Dickinson) analysis as previously described . In all assays, normal mouse IgG was used as the negative control.
M-RON and M-RONE5/6in cells (3 × 106 cells/ml) in DMEM were treated with 0.05% of trypsin for various times. Cellular proteins (350 μg/sample) from lysates of M-RON or M-RONE5/6in cells were first immunoprecipitated by Zt/g4 (1 μg/sample) coupled with protein G Sepharose beads . Samples were then separated in 8% SDS-PAGE under reduced conditions followed by transfer to a poly(vinylidene difluoride) membrane (Problott; Applied Biosystems) . The protein bands were identified, marked and analyzed directly on an Applied Biosystems 473A protein sequencer fitted with a reaction cartridge specifically designed for poly(vinylidene difluoride) bound samples at the Colorado State University Core facility (Ford Collin, Co).
Cell migration assays
Wound healing assays were used to determine the ability of cells to migrate to cover the open space as previously described . Cells were stimulated with MSP (2 nM) for 16 h. The percentage of open spaces covered by migrated cells was determined as previously described .
Bioassays for cell focus formation and anchorage-independent growth in soft agar
Both assays were performed as previously described . For focus formation, cultured NIH-3T3 cells in 30 mm diameter dish were transiently transfected with the pcDNA3.1 expression vector containing RON, RON160, or RONE5/6in cDNA, respectively. Foci were counted after cells were maintained in DMEM with 1% FBS for 18 days. For colony formation, cells (2000 cells/dish) in 2 ml DMEM with 5% FBS and 0.3% agarose were seeded in a 30 mm diameter culture dish containing 0.7% agarose. The colony numbers were determined 18 days after initiation of cell culture.
Different RON mRNA transcripts with alterations in the first IPT unit are present in colon, breast, and pancreatic cancer cells
Identification of RON mRNA transcripts with alterations in the first IPT Unit in colon, breast, and pancreatic cancer cells.
Types of RON mRNA transcripts*
Cancer Cell lines
Wild type (0.54 kb)
Deletion of exons 5 & 6 (0.21 kb)
Insertion btw exons 5 & 6 (0.6 kb)
An interesting finding was the detection of a 0.6 kb Fgm III from HT-29, SW620, Du4475, and Panc-1 cells. Sequence analysis showed an insertion of 20-amino acids (60 nucleotides) between the last amino acid of exon 5 (Arg627) and the first amino acid of exon 6 (Pro628) (Figure 1A and Table 1). The inserted sequences were identical among fragments amplified from four cell lines. By comparing the genomic sequence of the RON gene , it was determined that 60 nucleotides belong to the intron sequence between exons 5 and 6, which were retained during the splicing process. The resulting product is a RON mRNA transcript, which should be expressed as a novel RON variant with insertion in the first IPT unit (designated as RONE5/6in). Thus, three specific mRNA transcripts encoding wild-type RON, RON160, and RONE5/6in were amplified from several cancer cell lines. Schematic representations of RON160 and RONE5/6in with deletion or insertion in the first IPT unit are shown in Figure 1B. Clearly, RONE5/6in is a novel variant that has not been previously reported.
Although wild-type RON and RON160 were detected by Western blot analysis using rabbit IgG specific to the RON C-terminus, we were unable to distinguish wild-type RON and RONE5/6in due to small differences in their protein size (data not shown). Moreover, since the molecular mass of RONE5/6in is almost identical to that of wild-type RON, we were unable to confirm if the RONE5/6in protein is expressed in RT-PCR positive cell lines. Nevertheless, existence of mRNA transcripts for RON160 and RONE5/6in provides us an opportunity to study the significance of the first IPT alterations in regulating RON-mediated activities.
RON160 and RONE5/6in are both expressed on cell surface but showed different phosphorylation status
Variant RONp110 is generated from RONE5/6in and RON but not from RON160 in response to cell-derived proteases
As shown in Figure 2A, the expression pattern of RONE5/6in differs from wild-type RON and RON160 with an additional RON variant (RONp110). Analysis by protein micro-sequencing revealed that RONp110 is a proteolytic cleaved and truncated protein missing the majority of the extracellular sequence (Figure 1A and 1B). The N-terminal first amino acid was Lys632, which is in the middle of the first IPT unit coded by exon 6. Consistent with these analyses, we detected a soluble RON isoform with molecular mass of ~80 kDa (designated as RONEr80) from culture fluids under non-reduced conditions. This protein was not observed in cells expressing RONE5/6in (data not shown). These results indicate that RONE5/6in is proteolytically processed to form RONp110 and RONEr80. Analysis of amino acids adjacent to Lys632 showed that the sequence Val-Pro-Arg-Lys632-Asp-Phe-Val is highly susceptible to digestion by trypsin-like serine proteases . This indicates that insertion in the first IPT unit facilitates the exposure of this particular sequence for potential digestion by trypsin-like serine proteases. In contrast, deletion of the first IPT unit eliminates this sequence. Therefore, RON160 is resistant to trypsin-like serine proteases.
To determine the source of trypsin-like proteases, M-RON160, and M-RONE5/6in cells were incubated for 72 h in serum-free or FBS-containing medium. M-RON cells were used as the control. Results from Western blot analysis showed that culture of M-RON cells with increased amounts of FBS does not result in any RONp110 formation, indicating that RONp110 is not produced by M-RON cells under regular culture conditions containing FBS (Figure 3B). Similarly, RONp110 was not generated from M-RON160 cells in the presence or absence of serum. In contrast, RONp110 was produced in M-RONE5/6in cells cultured with serum-free medium (Figure 3C). Addition of serum did not further increase RONp110 production by M-RONE5/6in cells. These results suggest that FBS is not the source for trypsin-like enzymes. It is very likely that cell-associated proteases are responsible for the generation of RONp110 in M-RONE5/6in cells.
To determine if cell-derived proteases are sensitive to inhibition by trypsin inhibitors, M-RONE5/6in cells in serum-free medium were treated with different amounts of STI. Results in Figure 3C showed that STI inhibits RONp110 formation in a dose-dependent manner, suggesting that although the nature of the enzyme is unknown, cell-associated trypsin-like protease(s) is responsible for the conversion of RONE5/6in into RONp110.
Cytoplasmic pro-RON160 and pro-RONE5/6in are differentially converted into α/β mature protein
Proteolytic conversion of the MET precursor is mediated by members of the subtilisin-like proprotein convertase family such as furin, which has the preferred Arg-X-Lys/Arg-Arg sequence as the cleavage site [37, 38]. We tested if delayed maturation is caused by insensitivity of pro-RONE/56in to furin-mediated cleavage. After purification by Zt/g4 immunoprecipitation, individual samples of pro-RON, pro-RON160, and pro-RONE5/6in were treated with various amounts of recombinant furin at 37°C and the conversion was evaluated by Western blot analysis. As shown in Figure 4B, pro-RON and pro-RON160 were correctly cleaved by furin in a dose-dependent manner. In contrast, pro-RONE5/6in was relatively insensitive to furin-mediated cleavage. When treated with 0.6 unit/ml of furin, only small amounts of pro-RONE5/6in were converted to the mature β-chain. Thus, pro-RONE5/6in is relatively insensitive to enzymatic cleavage by protein convertase furin.
Down-regulation of RONE5/6in but not RON160 is significantly accelerated upon anti-RON mAb engagement
Chemical inhibitors, concanamycin A (Ccm-A) and lactacystin that specifically inhibit lysosome and proteoasome-mediated protein degradation, respectively [40, 41], were used to determine how internalized proteins were degraded. Results in Figure 5C show the preventive effect of Ccm-A on lysosome-mediated degradation of RON, RON160, and RONE5/6in in MDCK cells. Although Ccm-A almost completely prevented Zt/g4-induced down-regulation of RON and RON160, it showed only a moderate effect on prevention of RONE/5/6in degradation. Similar results were also observed when proteoasome inhibitor lactacystin was used (Figure 5D). In this case, lactacystin almost completely prevented RON and RON160 degradation. However, degradation of RONE5/6in was only partially prevented by lactacystin. These results suggest that inhibition of lysosome or proteoasome-mediated degradation prevents Zt/g4-induced RON and RON160 down-regulation. However, Ccm-A or lactacystin alone only partially prevents Zt/g4-induced degradation of RONE5/6in.
Functional differences between RON160 and RONE5/6in in regulating tumorigenic activities
Results from analysis of cell migration showed that expression of RONE5/6in moderately increases spontaneous migration of MDCK cells (from 0% to 48%). The migration was further enhanced by MSP stimulation (from 53% to 78%). In contrast, RON160 expression significantly increases spontaneous migration (from 0% to 86%) (Figure 6C). MSP stimulation also slightly enhanced this activity (from 86% to 93%). Experiments using MAP kinase (PD98059) or PI-3 kinase (wortmannin) inhibitors further showed that spontaneous or MSP-induced migration is preventable by addition of PD98058 in all cell lines tested. In contrast, the effect of wortmannin was minimal. These results demonstrate that RON160 is a much stronger molecule than RONE5/6in in induction of EMT and cell migration.
Consistent with focus formation studies, results from the soft agar experiments showed that RONE5/6in expression does not lead to colony formation in soft agar. Addition of MSP only marginally stimulated a few small-sized colonies grown in soft agar. In contrast, RON160 expression resulted in numerous colony growths in soft agar. This effect was further enhanced after MSP is added to cell culture. Moreover, the size of individual colonies was much bigger than those in unstimulated 3T3-RON160 cells. Thus, like wild-type RON, RONE5/6in is not a transforming agent. Its expression is not sufficient to cause focus and colony formation. In contrast, RON160 is a strong transforming agent, which can be verified in both focus and colony formation assays.
The findings in this study demonstrate that alterations in the first IPT unit in the RON extracellular sequence results in two novel variants with different biological profiles. Structurally, the IPT units consist of 80 to 100 amino acids and are featured by immunoglobulin-like fold [25, 43]. The IPT units are also found in certain transcription factors such as NF-κB and c-Jun, where it is involved in protein-protein and/or protein-DNA interaction . The significance of the IPT units in MET and RON has recently been discovered and emphasized. The deletion of the first IPT unit in the RON extracellular sequences converts wild-type RON into oncogenic agent RON160 , although the underlying mechanisms are unknown. In MET, the fourth IPT unit in the β-chain extracellular sequence harbors a high affinity binding site for ligand HGF/SF . HGF/SF binding to this IPT unit is essential for induction of MET activation . Clearly, these findings illustrate the importance of the IPT units in MET/RON-mediated signaling cascades and tumorigenic activities. The data from our current studies demonstrate that deletion or insertion in the RON first IPT unit exerts different consequences. Although deletion of the first IPT unit leads to oncogenic conversion, insertion of 20 amino acids in the same unit is not sufficient to transform the RON protein into an oncogenic agent. However, insertion has important impact on biochemical properties of RON. We show that proteolytic conversion of pro-RONE5/6in into the two-chain mature protein by convertase furin is significantly delayed upon precursor synthesis. RONE5/6in is also highly susceptible to cell-associated serine proteases, which act on a short sequence leading to generation of another variant RONp110. Moreover, RONE5/6in is internalized in an accelerated manner upon anti-RON mAb engagement. Thus, alterations in the first IPT unit differentially regulate RON-mediated activity with different biochemical properties. In addition, generation of RON160 and RONE5/6in provides an opportunity to understand the roles of IPT units in regulating RON activation and activity, which could aid to develop therapeutic agents for inhibition of RON-mediated tumorigenic signaling.
Overexpression of RON in cancerous tissues is often accompanied with the generation of aberrant mRNA transcripts and their corresponding variants [13, 14]. This has been considered as a mechanism by which RON displays its protein diversity and regulates epithelial homeostasis and malignant transformation . A survey by PCR of primary colon, lung, breast, and brain tumor samples has revealed that aberrant mRNA transcripts encoding for known and unknown variants such as RON165, RON160, and RON155 were wildly produced with relatively high frequencies in colon, breast, lung and other types of cancers . These variants are mainly generated by aberrant mRNA splicing processes that delete exon 11 (RON165), exons 5 and 6 (RON160), and exons 5, 6 and 11 (RON155) [7, 46]. It needs to be emphasized that exon 11 encodes 49 amino acids belonging to the fourth IPT unit in the RON β-chain extracellular sequences , which is required for pro-RON maturation and cell surface localization . Results in current studies demonstrate that alterations in the first IPT unit in the RON protein are not a rare occurrence. Among 12 cancer cell lines analyzed, abnormality in the first IPT unit was observed in 5 cell lines originating from colon, breast and pancreatic tumors. These results are consistent with those from analysis of primary tumor samples [14, 46]. As reported, deletion of exons 5 and 6 were observed in more than 50% of primary colon and 90% of brain tumor samples but not in any normal tissues [14, 46]. Further analysis of insertions between exons 5 and 6 using clinical tumor samples would be very informative. Although the underlying mechanisms of variant generation are currently unknown, it is known that aberrant splicing and intron retention in receptor tyrosine kinases occur commonly in cancer cells [47, 48]. Considering the oncogenicity is of RON160 in vivo, such alterations with high frequencies should have pathogenic significance in relevance to tumor progression and malignant phenotypes.
Biochemical and Biological Differences between RON160 and RONE5/6in
Similarity and Difference*:
mRNA in tumor cell lines
11 out of 12 in CC, BC, PC lines
4 out of 12 in CC, BC lines
4 out of 12 in CC, BC, PC lines.
First IPT unit
Response to MSP
Generation of RONp110
upon trypsin treatment
spontaneous and trypsin treatment
Induction of EMT
This work was supported in part by R01 grant (CA91980) from US National Institutes of Health and Amarillo Area Foundation (to MHW). We thank Dr. E. J. Leonard (National Cancer Institutes of Health, Bethesda, MD) for providing mature human MSP. The assistance from Ms. Snehal S. Padhye (Texas Tech University HSC School of Pharmacy, Amarillo, TX) in editing the manuscript is greatly appreciated.
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