Table 1 Genes represented by probe mixtures (ME001B and ME003-A1)
From: Promoter Methylation status of HIN-1 associated with outcomes of ovarian clear cell adenocarcinoma
ME001B | ME003-A1 | ||||
|---|---|---|---|---|---|
Gene | Chromosonal position | UniGene | Gene | Chromosomal position | UniGene |
APC | 5q21 | Hs.158932 | BCL2 | 18q21.3 | Hs.150749 |
ATM | 11q23 | Hs.367437 | BNIP3 | 10q26.3 | Hs.144873 |
BRCA1 | 17q21 | Hs.194143 | CACNA1A | 19p13.2 | Hs.501632 |
BRCA2 | 13q12 | Hs.34012 | CACNA1G | 17q21.33 | Hs.591169 |
CASP8 | 2q33-q34 | Hs.599762 | CCND2** | 12p13.3 | Hs.376071 |
CD44 | 11p13 | Hs.502328 | DLC1** | 8p22 | Hs.134296 |
CDG13 | 16q24.2 | Hs.654386 | H2AFX** | 11q23.3 | Hs.477879 |
CDKN1B | 12p13.1 | Hs.238990 | ID4** | 6p22.3 | Hs.519601 |
CDKN2A | 9p21 | Hs.238990 | PRDM2 | 1p36.21 | Hs.371823 |
CDKN2B | 9p21 | Hs.72901 | RARB* | 3p24 | Hs.654490 |
CHFR | 12q24.33 | Hs.656770 | RUNX3 | 1p36.11 | Hs.170019 |
DAPK1 | 9q34.1 | Hs.380277 | SCG3A1** | 5q35 | Hs.62492 |
ESR1 | 6q25.1 | Hs.208124 | SFRP4** | 7p14.1 | Hs.658169 |
FHIT | 3p14.2 | Hs.715588 | SFRP5** | 10q24.1 | Hs.279565 |
GSTP1 | 11q13 | Hs.523836 | SMARCA3** | 3q25.1 | Hs.3068 |
HIC1 | 17p13.3 | Hs.72956 | TGIF | 18p11.31 | Hs.373550 |
IGSF4 | 11q23 | Hs.370510 | TIMP3 | 22q12.3 | Hs.644633 |
MLH1 | 3p21.3 | Hs.195364 | TWIST1 | 7p21.2 | Hs.66744 |
PTEN | 10q23.31 | Hs.500466 | Â | Â | Â |
RASSF1 | 3p21.3 | Hs.476270 | Â | Â | Hs. |
TP73 | 1p36 | Hs.697294 | Â | Â | Â |
VHL | 3p26-p25 | Hs.517792 | Â | Â | Â |