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Table 1 Pathways significantly enriched in the list of genes down-regulated by miR-125b and with a MRE in 3'UTR (source: GeneGO Metacore)

From: miR-125b targets erythropoietin and its receptor and their expression correlates with metastatic potential and ERBB2/HER2 expression

#

Maps

pValue

Ratio

1

Immune response_CD28 signaling

2.304E-04

5

54

2

Development_EPO-induced PI3K/AKT pathway and Ca(2+) influx

9.912E-04

4

43

3

Neurophysiological process_Melatonin signaling

9.912E-04

4

43

4

Development_A2A receptor signaling

9.912E-04

4

43

5

Development_EPO-induced MAPK pathway

1.178E-03

4

45

6

Development_WNT5A signaling

1.280E-03

4

46

7

Neurophysiological process_NMDA-dependent postsynaptic long-term potentiation in CA1 hippocampal neurons

1.417E-03

5

80

8

Nicotine signaling in dopaminergic neurons, Pt. 1 - cell body

1.502E-03

4

48

9

Development_A2B receptor: action via G-protein alpha s

1.750E-03

4

50

10

Signal transduction_PKA signaling

1.884E-03

4

51

11

Immune response_HSP60 and HSP70/ TLR signaling pathway

2.329E-03

4

54

12

Cell adhesion_Gap junctions

3.608E-03

3

30

13

Development_EGFR signaling pathway

4.086E-03

4

63

14

Oxidative stress_Role of ASK1 under oxidative stress

5.161E-03

3

34

15

Reproduction_GnRH signaling

6.576E-03

4

72

16

Development_Mu-type opioid receptor signaling

7.062E-03

3

38

17

Signal transduction_cAMP signaling

7.062E-03

3

38

18

Transcription_P53 signaling pathway

7.594E-03

3

39

19

Development_PACAP signaling in neural cells

7.594E-03

3

39

20

Apoptosis and survival_Lymphotoxin-beta receptor signaling

9.328E-03

3

42

21

Nicotine signaling in dopaminergic neurons, Pt. 2 - axon terminal

9.953E-03

3

43

22

Development_S1P1 signaling pathway

1.060E-02

3

44

23

Neurophysiological process_Glutamate regulation of Dopamine D1A receptor signaling

1.128E-02

3

45

24

Transcription_Androgen Receptor nuclear signaling

1.128E-02

3

45

25

Development_Thrombopoietin-regulated cell processes

1.128E-02

3

45

26

Development_GDNF family signaling

1.197E-02

3

46

27

Neurophysiological process_Dopamine D2 receptor signaling in CNS

1.269E-02

3

47

28

Development_TGF-beta-dependent induction of EMT via MAPK

1.269E-02

3

47

29

Development_HGF signaling pathway

1.269E-02

3

47

30

Immune response_Histamine H1 receptor signaling in immune response

1.344E-02

3

48

31

Immune response_Lectin induced complement pathway

1.421E-02

3

49

32

Development_A3 receptor signaling

1.421E-02

3

49

33

Immune response_Histamine signaling in dendritic cells

1.501E-02

3

50

34

Mucin expression in CF via TLRs, EGFR signaling pathways

1.501E-02

3

50

35

Immune response_NFAT in immune response

1.583E-02

3

51

36

Development_IGF-1 receptor signaling

1.667E-02

3

52

37

Signal transduction_Activation of PKC via G-Protein coupled receptor

1.667E-02

3

52

38

Cell adhesion_ECM remodeling

1.667E-02

3

52

39

Immune response_Classical complement pathway

1.667E-02

3

52

40

Development_Endothelin-1/EDNRA signaling

1.754E-02

3

53

41

Membrane-bound ESR1: interaction with G-proteins signaling

1.844E-02

3

54

42

Development_FGFR signaling pathway

1.844E-02

3

54

43

Immune response_Fc epsilon RI pathway

1.936E-02

3

55

44

Regulation of lipid metabolism_Insulin regulation of glycogen metabolism

2.030E-02

3

56

45

Cytoskeleton remodeling_FAK signaling

2.127E-02

3

57

46

Immune response_Immunological synapse formation

2.329E-02

3

59

47

Development_EGFR signaling via PIP3

2.351E-02

2

23

48

Development_Thyroliberin signaling

2.540E-02

3

61

49

Development_Gastrin in cell growth and proliferation

2.650E-02

3

62

50

G-protein signaling_K-RAS regulation pathway

2.750E-02

2

25