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Table 2 Deregulated mRNAs in Hepatitis B virus-associated HCC

From: Small nucleolar RNA 113–1 suppresses tumorigenesis in hepatocellular carcinoma

Symbol

Description

Fold change

p-value

Up-regulated mRNAs

   

 PGC

progastricsin (pepsinogen C)

47.64004927

0.0023

 AFP

alpha-fetoprotein

44.39471392

0.0034

 AKR1B10

aldo-keto reductase family 1, member B10 (aldose reductase)

34.90323855

0.0031

 GPC3

glypican 3

33.3617948

0.0025

 REG3A

regenerating islet-derived 3 alpha

29.11429945

0.0016

 SPP1

secreted phosphoprotein 1 (osteopontin, early T-lymphocyte activation 1)

23.96828868

0.0031

 SQLE

squalene epoxidase

23.32641995

0.0035

 FADS2

fatty acid desaturase 2

20.89067206

0.0015

 CDR1

cerebellar degeneration-related protein 1, 34kDa

18.83885007

0.0034

 ACSL4

acyl-CoA synthetase long-chain family member 4

17.80369764

0.0051

 Q9BT26_HUMAN

MGC10981 protein. [Source:Uniprot/SPTREMBL; Acc:Q9BT26]

16.69515983

0.0016

 MEP1A

meprin A, alpha (PABA peptide hydrolase)

16.42375379

0.0023

 TOP2A

topoisomerase (DNA) II alpha 170kDa

16.41288559

0.0031

 MKI67

antigen identified by monoclonal antibody Ki-67

15.96034575

0.0035

 NQO1

NAD(P)H dehydrogenase, quinone 1

15.93951691

0.0042

 CENPF

centromere protein F, 350/400ka (mitosin)

14.37592617

0.0028

 ANLN

anillin, actin binding protein

14.34102265

0.0018

 Q6ZN80_HUMAN

CDNA FLJ16351 fis, clone TESTI2039060, moderately similar to Maltase- glucoamylase, intestinal. [Source: Uniprot/SPTREMBL; Acc:Q6ZN80]

14.12849608

0.0037

 ASPM

asp (abnormal spindle) homolog, microcephaly associated (Drosophila)

13.47005653

0.0031

 PROM1

prominin 1

12.79763216

0.0029

 SPINK1

serine peptidase inhibitor, Kazal type 1

12.7974104

0.0051

 Q6ZUK9_HUMAN

CDNA FLJ43606 fis, clone SPLEN2009548 (Hypothetical LOC613266). [Source: Uniprot/SPTREMBL; Acc:Q6ZUK9]

12.61622159

0.0037

 SULT1C2

sulfotransferase family, cytosolic, 1C, member 2

12.22079301

0.0029

 LYZ

lysozyme (renal amyloidosis)

11.95607544

0.0016

 LGR5

leucine-rich repeat-containing G protein-coupled receptor 5

11.46664156

0.0028

 HIST2H4A

histone cluster 2, H4a

10.97942046

0.0034

 FMO1

flavin containing monooxygenase 1

10.69015599

0.0009

 NUSAP1

nucleolar and spindle associated protein 1

10.56415889

0.0038

 BPIL1

bactericidal/permeability-increasing protein-like 1

10.11522846

0.0051

Down-regulated miRNAs

   

 TAT

tyrosine aminotransferase

0.016479668

0.0037

 JDP2

Jun dimerization protein 2

0.017312537

0.0027

 HSD17B13

hydroxysteroid (17-beta) dehydrogenase 13

0.018812312

0.0018

 CYP2B6

cytochrome P450, family 2, subfamily B, polypeptide 6

0.025612431

0.0031

 PCK1

phosphoenolpyruvate carboxykinase 1 (soluble)

0.029105346

0.0023

 NR_003229.1

small nucleolar RNA, C/D box 113–1 (SNORD113-1) on chromosome 14 [Source: RefSeq_dna; Acc:NR_003229]

0.040807072

0.0028

 GLYAT

glycine-N-acyltransferase

0.041146571

0.0034

 NR_001278.1

cytochrome P450, family 2, subfamily B, polypeptide 7 pseudogene 1 (CYP2B7P1) on chromosome 19 [Source: RefSeq_dna; Acc:NR_001278]

0.046105574

0.0037

 HSD11B1

hydroxysteroid (11-beta) dehydrogenase 1

0.047541954

0.0046

 ABCA8

ATP-binding cassette, sub-family A (ABC1), member 8

0.048856354

0.0008

 SDS

serine dehydratase

0.049689196

0.0035

 CYP1A2

cytochrome P450, family 1, subfamily A, polypeptide 2

0.052959819

0.0019

 MFSD2

major facilitator superfamily domain containing 2

0.053182596

0.0016

 GYS2

glycogen synthase 2 (liver)

0.054336295

0.0031

 SLC22A1

solute carrier family 22 (organic cation transporter), member 1

0.059035231

0.0029

 ADH4

alcohol dehydrogenase 4 (class II), pi polypeptide

0.061977699

0.0046

 NR_003193.1

small nucleolar RNA, C/D box 114–1 (SNORD114-1) on chromosome 14 [Source: RefSeq_dna; Acc: NR_003193]

0.064302828

0.0027

 BCO2

beta-carotene oxygenase 2

0.068982298

0.0031

 PZP

pregnancy-zone protein

0.068984067

0.0061

 HPD

4-hydroxyphenylpyruvate dioxygenase

0.069601683

0.0043

 MT1G

metallothionein 1G

0.071319826

0.0037

 CRHBP

corticotropin releasing hormone binding protein

0.073777924

0.0031

 MT1M

metallothionein 1M

0.076630206

0.0026

 FOS

v-fos FBJ murine osteosarcoma viral oncogene homolog

0.078040509

0.0052

 COLEC10

collectin sub-family member 10 (C-type lectin)

0.085870417

0.0048

 NR_003234.1

small nucleolar RNA, C/D box 113–6 (SNORD113-6) on chromosome 14 [Source: RefSeq_dna; Acc: NR_003234]

0.086148113

0.0037

 SLC10A1

solute carrier family 10 (sodium/bile acid cotransporter family), member 1

0.086419698

0.0034

 CYP8B1

cytochrome P450, family 8, subfamily B, polypeptide 1

0.088848979

0.0016

 CNDP1

carnosine dipeptidase 1 (metallopeptidase M20 family)

0.089111411

0.0018

 FOSB

FBJ murine osteosarcoma viral oncogene homolog B

0.092529294

0.0027

 MT1P2

metallothionein 1 pseudogene 2

0.092597882

0.0034

 C7

complement component 7

0.093307121

0.0036

 NR_003210.1

small nucleolar RNA, C/D box 114–17 (SNORD114-17) on chromosome 14 [Source: RefSeq_dna; Acc: NR_003210]

0.094172719

0.0043

 CYP3A4

cytochrome P450, family 3, subfamily A, polypeptide 4

0.096675826

0.0019

 XDH

xanthine dehydrogenase

0.099523084

0.0022