TY - JOUR AU - Siegel, R. AU - Naishadham, D. AU - Jemal, A. PY - 2013 DA - 2013// TI - Cancer statistics, 2013 JO - CA Cancer J Clin VL - 63 UR - https://doi.org/10.3322/caac.21166 DO - 10.3322/caac.21166 ID - Siegel2013 ER - TY - JOUR AU - Naora, H. PY - 2007 DA - 2007// TI - The heterogeneity of epithelial ovarian cancers: reconciling old and new paradigms JO - Expert Rev Mol Med VL - 9 UR - https://doi.org/10.1017/S1462399407000324 DO - 10.1017/S1462399407000324 ID - Naora2007 ER - TY - JOUR AU - Bowtell, D. D. PY - 2010 DA - 2010// TI - The genesis and evolution of high-grade serous ovarian cancer JO - Nat Rev Cancer VL - 10 UR - https://doi.org/10.1038/nrc2946 DO - 10.1038/nrc2946 ID - Bowtell2010 ER - TY - JOUR AU - Kobel, M. AU - Kalloger, S. E. AU - Huntsman, D. G. AU - Santos, J. L. AU - Swenerton, K. D. AU - Seidman, J. D. AU - Gilks, C. B. PY - 2010 DA - 2010// TI - Differences in tumor type in low-stage versus high-stage ovarian carcinomas JO - Int J Gynecol Pathol VL - 29 UR - https://doi.org/10.1097/PGP.0b013e3181c042b6 DO - 10.1097/PGP.0b013e3181c042b6 ID - Kobel2010 ER - TY - JOUR AU - Landen, C. N. AU - Birrer, M. J. AU - Sood, A. K. PY - 2008 DA - 2008// TI - Early events in the pathogenesis of epithelial ovarian cancer JO - J Clin Oncol VL - 26 UR - https://doi.org/10.1200/JCO.2006.07.9970 DO - 10.1200/JCO.2006.07.9970 ID - Landen2008 ER - TY - JOUR AU - Gloss, B. S. AU - Patterson, K. I. AU - Barton, C. A. AU - Gonzalez, M. AU - Scurry, J. P. AU - Hacker, N. F. AU - Sutherland, R. L. AU - O’Brien, P. M. AU - Clark, S. J. PY - 2012 DA - 2012// TI - Integrative genome-wide expression and promoter DNA methylation profiling identifies a potential novel panel of ovarian cancer epigenetic biomarkers JO - Cancer Lett VL - 318 UR - https://doi.org/10.1016/j.canlet.2011.12.003 DO - 10.1016/j.canlet.2011.12.003 ID - Gloss2012 ER - TY - JOUR AU - Prensner, J. R. AU - Iyer, M. K. AU - Balbin, O. A. AU - Dhanasekaran, S. M. AU - Cao, Q. AU - Brenner, J. C. AU - Laxman, B. AU - Asangani, I. A. AU - Grasso, C. S. AU - Kominsky, H. D. PY - 2011 DA - 2011// TI - Transcriptome sequencing across a prostate cancer cohort identifies PCAT-1, an unannotated lincRNA implicated in disease progression JO - Nat Biotechnol VL - 29 UR - https://doi.org/10.1038/nbt.1914 DO - 10.1038/nbt.1914 ID - Prensner2011 ER - TY - JOUR AU - Gupta, R. A. AU - Shah, N. AU - Wang, K. C. AU - Kim, J. AU - Horlings, H. M. AU - Wong, D. J. AU - Tsai, M. C. AU - Hung, T. AU - Argani, P. AU - Rinn, J. L. PY - 2010 DA - 2010// TI - Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis JO - Nature VL - 464 UR - https://doi.org/10.1038/nature08975 DO - 10.1038/nature08975 ID - Gupta2010 ER - TY - JOUR AU - Khalil, A. M. AU - Guttman, M. AU - Huarte, M. AU - Garber, M. AU - Raj, A. AU - Rivea Morales, D. AU - Thomas, K. AU - Presser, A. AU - Bernstein, B. E. AU - van Oudenaarden, A. PY - 2009 DA - 2009// TI - Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression JO - Proc Natl Acad Sci U S A VL - 106 UR - https://doi.org/10.1073/pnas.0904715106 DO - 10.1073/pnas.0904715106 ID - Khalil2009 ER - TY - JOUR AU - Clark, S. J. PY - 2007 DA - 2007// TI - Action at a distance: epigenetic silencing of large chromosomal regions in carcinogenesis JO - Hum Mol Genet VL - 16 Spec No 1 UR - https://doi.org/10.1093/hmg/ddm051 DO - 10.1093/hmg/ddm051 ID - Clark2007 ER - TY - JOUR AU - Coolen, M. W. AU - Stirzaker, C. AU - Song, J. Z. AU - Statham, A. L. AU - Kassir, Z. AU - Moreno, C. S. AU - Young, A. N. AU - Varma, V. AU - Speed, T. P. AU - Cowley, M. PY - 2010 DA - 2010// TI - Consolidation of the cancer genome into domains of repressive chromatin by long-range epigenetic silencing (LRES) reduces transcriptional plasticity JO - Nat Cell Biol VL - 12 ID - Coolen2010 ER - TY - JOUR AU - Frigola, J. AU - Song, J. AU - Stirzaker, C. AU - Hinshelwood, R. A. AU - Peinado, M. A. AU - Clark, S. J. PY - 2006 DA - 2006// TI - Epigenetic remodeling in colorectal cancer results in coordinate gene suppression across an entire chromosome band JO - Nat Genet VL - 38 UR - https://doi.org/10.1038/ng1781 DO - 10.1038/ng1781 ID - Frigola2006 ER - TY - JOUR AU - Stirzaker, C. AU - Song, J. Z. AU - Davidson, B. AU - Clark, S. J. PY - 2004 DA - 2004// TI - Transcriptional gene silencing promotes DNA hypermethylation through a sequential change in chromatin modifications in cancer cells JO - Cancer Res VL - 64 UR - https://doi.org/10.1158/0008-5472.CAN-03-3690 DO - 10.1158/0008-5472.CAN-03-3690 ID - Stirzaker2004 ER - TY - JOUR AU - Kurman, R. J. AU - Shih Ie, M. PY - 2010 DA - 2010// TI - The origin and pathogenesis of epithelial ovarian cancer: a proposed unifying theory JO - Am J Surg Pathol VL - 34 UR - https://doi.org/10.1097/PAS.0b013e3181cf3d79 DO - 10.1097/PAS.0b013e3181cf3d79 ID - Kurman2010 ER - TY - JOUR AU - Chan, J. K. AU - Teoh, D. AU - Hu, J. M. AU - Shin, J. Y. AU - Osann, K. AU - Kapp, D. S. PY - 2008 DA - 2008// TI - Do clear cell ovarian carcinomas have poorer prognosis compared to other epithelial cell types? A study of 1411 clear cell ovarian cancers JO - Gynecol Oncol VL - 109 UR - https://doi.org/10.1016/j.ygyno.2008.02.006 DO - 10.1016/j.ygyno.2008.02.006 ID - Chan2008 ER - TY - JOUR AU - Yang, Z. AU - Zhou, L. AU - Wu, L. M. AU - Lai, M. C. AU - Xie, H. Y. AU - Zhang, F. AU - Zheng, S. S. PY - 2011 DA - 2011// TI - Overexpression of long non-coding RNA HOTAIR predicts tumor recurrence in hepatocellular carcinoma patients following liver transplantation JO - Ann Surg Oncol VL - 18 UR - https://doi.org/10.1245/s10434-011-1581-y DO - 10.1245/s10434-011-1581-y ID - Yang2011 ER - TY - JOUR AU - Kim, K. AU - Jutooru, I. AU - Chadalapaka, G. AU - Johnson, G. AU - Frank, J. AU - Burghardt, R. AU - Kim, S. AU - Safe, S. PY - 2013 DA - 2013// TI - HOTAIR is a negative prognostic factor and exhibits pro-oncogenic activity in pancreatic cancer JO - Oncogene VL - 32 UR - https://doi.org/10.1038/onc.2012.193 DO - 10.1038/onc.2012.193 ID - Kim2013 ER - TY - JOUR AU - Ji, P. AU - Diederichs, S. AU - Wang, W. AU - Boing, S. AU - Metzger, R. AU - Schneider, P. M. AU - Tidow, N. AU - Brandt, B. AU - Buerger, H. AU - Bulk, E. PY - 2003 DA - 2003// TI - MALAT-1, a novel noncoding RNA, and thymosin beta4 predict metastasis and survival in early-stage non-small cell lung cancer JO - Oncogene VL - 22 UR - https://doi.org/10.1038/sj.onc.1206928 DO - 10.1038/sj.onc.1206928 ID - Ji2003 ER - TY - JOUR AU - Guttman, M. AU - Amit, I. AU - Garber, M. AU - French, C. AU - Lin, M. F. AU - Feldser, D. AU - Huarte, M. AU - Zuk, O. AU - Carey, B. W. AU - Cassady, J. P. PY - 2009 DA - 2009// TI - Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals JO - Nature VL - 458 UR - https://doi.org/10.1038/nature07672 DO - 10.1038/nature07672 ID - Guttman2009 ER - TY - JOUR AU - Rinn, J. L. AU - Chang, H. Y. PY - 2012 DA - 2012// TI - Genome regulation by long noncoding RNAs JO - Annu Rev Biochem VL - 81 UR - https://doi.org/10.1146/annurev-biochem-051410-092902 DO - 10.1146/annurev-biochem-051410-092902 ID - Rinn2012 ER - TY - JOUR AU - Poliseno, L. AU - Salmena, L. AU - Zhang, J. AU - Carver, B. AU - Haveman, W. J. AU - Pandolfi, P. P. PY - 2010 DA - 2010// TI - A coding-independent function of gene and pseudogene mRNAs regulates tumour biology JO - Nature VL - 465 UR - https://doi.org/10.1038/nature09144 DO - 10.1038/nature09144 ID - Poliseno2010 ER - TY - JOUR AU - Ulitsky, I. AU - Shkumatava, A. AU - Jan, C. H. AU - Sive, H. AU - Bartel, D. P. PY - 2011 DA - 2011// TI - Conserved function of lincRNAs in vertebrate embryonic development despite rapid sequence evolution JO - Cell VL - 147 UR - https://doi.org/10.1016/j.cell.2011.11.055 DO - 10.1016/j.cell.2011.11.055 ID - Ulitsky2011 ER - TY - JOUR AU - Gou, D. AU - Wang, J. AU - Gao, L. AU - Sun, Y. AU - Peng, X. AU - Huang, J. AU - Li, W. PY - 2004 DA - 2004// TI - Identification and functional analysis of a novel human KRAB/C2H2 zinc finger gene ZNF300 JO - Biochim Biophys Acta VL - 1676 UR - https://doi.org/10.1016/j.bbaexp.2003.11.011 DO - 10.1016/j.bbaexp.2003.11.011 ID - Gou2004 ER - TY - JOUR AU - Wang, T. AU - Wang, X. G. AU - Xu, J. H. AU - Wu, X. P. AU - Qiu, H. L. AU - Yi, H. AU - Li, W. X. PY - 2012 DA - 2012// TI - Overexpression of the human ZNF300 gene enhances growth and metastasis of cancer cells through activating NF-kB pathway JO - J Cell Mol Med VL - 16 UR - https://doi.org/10.1111/j.1582-4934.2011.01388.x DO - 10.1111/j.1582-4934.2011.01388.x ID - Wang2012 ER - TY - JOUR AU - Kalari, S. AU - Jung, M. AU - Kernstine, K. H. AU - Takahashi, T. AU - Pfeifer, G. P. PY - 2012 DA - 2012// TI - The DNA methylation landscape of small cell lung cancer suggests a differentiation defect of neuroendocrine cells JO - Oncogene VL - 32 UR - https://doi.org/10.1038/onc.2012.362 DO - 10.1038/onc.2012.362 ID - Kalari2012 ER - TY - JOUR AU - Martin-Belmonte, F. AU - Perez-Moreno, M. PY - 2012 DA - 2012// TI - Epithelial cell polarity, stem cells and cancer JO - Nat Rev Cancer VL - 12 ID - Martin-Belmonte2012 ER - TY - JOUR AU - Barton, C. A. AU - Gloss, B. S. AU - Qu, W. AU - Statham, A. L. AU - Hacker, N. F. AU - Sutherland, R. L. AU - Clark, S. J. AU - O’Brien, P. M. PY - 2010 DA - 2010// TI - Collagen and calcium-binding EGF domains 1 is frequently inactivated in ovarian cancer by aberrant promoter hypermethylation and modulates cell migration and survival JO - Br J Cancer VL - 102 UR - https://doi.org/10.1038/sj.bjc.6605429 DO - 10.1038/sj.bjc.6605429 ID - Barton2010 ER - TY - JOUR AU - Rosen, D. G. AU - Yang, G. AU - Bast, R. C. AU - Liu, J. PY - 2006 DA - 2006// TI - Use of Ras-transformed human ovarian surface epithelial cells as a model for studying ovarian cancer JO - Methods Enzymol VL - 407 UR - https://doi.org/10.1016/S0076-6879(05)07052-7 DO - 10.1016/S0076-6879(05)07052-7 ID - Rosen2006 ER - TY - JOUR AU - Clark, S. J. AU - Statham, A. AU - Stirzaker, C. AU - Molloy, P. L. AU - Frommer, M. PY - 2006 DA - 2006// TI - DNA methylation: bisulphite modification and analysis JO - Nat Protoc VL - 1 UR - https://doi.org/10.1038/nprot.2006.324 DO - 10.1038/nprot.2006.324 ID - Clark2006 ER - TY - JOUR AU - Clark, S. J. AU - Harrison, J. AU - Paul, C. L. AU - Frommer, M. PY - 1994 DA - 1994// TI - High sensitivity mapping of methylated cytosines JO - Nucleic Acids Res VL - 22 UR - https://doi.org/10.1093/nar/22.15.2990 DO - 10.1093/nar/22.15.2990 ID - Clark1994 ER - TY - JOUR AU - Coolen, M. W. AU - Statham, A. L. AU - Gardiner-Garden, M. AU - Clark, S. J. PY - 2007 DA - 2007// TI - Genomic profiling of CpG methylation and allelic specificity using quantitative high-throughput mass spectrometry: critical evaluation and improvements JO - Nucleic Acids Res VL - 35 UR - https://doi.org/10.1093/nar/gkm662 DO - 10.1093/nar/gkm662 ID - Coolen2007 ER - TY - JOUR AU - Statham, A. L. AU - Strbenac, D. AU - Coolen, M. W. AU - Stirzaker, C. AU - Clark, S. J. AU - Robinson, M. D. PY - 2010 DA - 2010// TI - Repitools: an R package for the analysis of enrichment-based epigenomic data JO - Bioinformatics VL - 26 UR - https://doi.org/10.1093/bioinformatics/btq247 DO - 10.1093/bioinformatics/btq247 ID - Statham2010 ER - TY - JOUR AU - Montavon, C. AU - Gloss, B. S. AU - Warton, K. AU - Barton, C. A. AU - Statham, A. L. AU - Scurry, J. P. AU - Tabor, B. AU - Nguyen, T. V. AU - Qu, W. AU - Samimi, G. PY - 2012 DA - 2012// TI - Prognostic and diagnostic significance of DNA methylation patterns in high grade serous ovarian cancer JO - Gynecol Oncol VL - 124 UR - https://doi.org/10.1016/j.ygyno.2011.11.026 DO - 10.1016/j.ygyno.2011.11.026 ID - Montavon2012 ER - TY - BOOK PY - 2010 DA - 2010// TI - R: A language and environment for statistical computing. R Foundation for Statistical Computing PB - Vienna CY - Austria ID - ref34 ER - TY - JOUR AU - Asao, T. AU - Yazawa, S. AU - Kudo, S. AU - Takenoshita, S. AU - Nagamachi, Y. PY - 1994 DA - 1994// TI - A novel ex vivo method for assaying adhesion of cancer cells to the peritoneum JO - Cancer Lett VL - 78 UR - https://doi.org/10.1016/0304-3835(94)90031-0 DO - 10.1016/0304-3835(94)90031-0 ID - Asao1994 ER -