Table 2 Descriptive statistics of number of reads before and after trimming and the percentage of annotated small RNAs measured in the peripheral blood of patients suffering from seminoma without metastasis as well as lymphogen and occult metastasized seminoma
From: Small RNAs in the peripheral blood discriminate metastasized from non-metastasized seminoma
Seminoma metastasis status | Total no. of reads | Reads after trimming | Annotated reads | Small RNA tags | ||||
|---|---|---|---|---|---|---|---|---|
abs. | % | abs. | % | abs. | abs. annotated | % | ||
Non-metastasized, n = 5 | ||||||||
Mean | 1.3E + 07 | 9.7E + 06 | 76 | 8.1E + 06 | 84 | 2.2E + 05 | 1.6E + 04 | 7.2 |
Stdev | 2.0E + 06 | 1.6E + 06 | 2.2 | 1.4E + 06 | 2.2 | 5.4E + 04 | 3.4E + 03 | 0.7 |
Min | 9.4E + 06 | 7.1E + 06 | 72 | 5.7E + 06 | 81 | 1.7E + 05 | 1.2E + 04 | 6.5 |
Max | 1.4E + 07 | 1.1E + 07 | 78 | 9.5E + 06 | 85 | 3.1E + 05 | 2.0E + 04 | 8.2 |
Lymphogen metastasized, n = 5 | ||||||||
Mean | 1.2E + 07 | 7.8E + 06 | 73 | 6.3E + 06 | 80 | 2.3E + 05 | 1.6E + 04 | 7.3 |
Stdev | 6.5E + 06 | 3.1E + 06 | 16 | 2.7E + 06 | 3.8 | 8.6E + 04 | 3.2E + 03 | 1.5 |
Min | 5.7E + 06 | 4.8E + 06 | 45 | 3.6E + 06 | 75 | 1.5E + 05 | 1.3E + 04 | 5.6 |
Max | 2.0E + 07 | 1.2E + 07 | 86 | 1.0E + 07 | 85 | 3.3E + 05 | 1.9E + 04 | 8.5 |
Occult metastasized, n = 5 | ||||||||
Mean | 1.2E + 07 | 9.0E + 06 | 73 | 7.3E + 06 | 82 | 2.3E + 05 | 1.7E + 04 | 7.8 |
Stdev | 4.3E + 06 | 3.5E + 06 | 6.6 | 2.8E + 06 | 2.5 | 5.1E + 04 | 9.4E + 02 | 1.4 |
Min | 6.7E + 06 | 4.7E + 06 | 64 | 3.8E + 06 | 79 | 1.8E + 05 | 1.6E + 04 | 5.9 |
Max | 1.9E + 07 | 1.4E + 07 | 81 | 1.1E + 07 | 85 | 3.1E + 05 | 1.8E + 04 | 10 |