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Table 1 On-line Resources

From: Genetic alteration and gene expression modulation during cancer progression

1. Sequence Databases
Nucleotide Sequence http://www.ncbi.nlm.nih.gov/ NCBI – GenBank
  http://www.ebi.ac.uk/embl.html EMBL-EBI – Nucleotide Sequence Database
  http://www.ddbj.nig.ac.jp DNA Data Bank of Japan
Transcript http://www.ncbi.nlm.nih.gov/UniGene/ NCBI – UniGene
  http://mcb.harvard.edu/gilbert/EID/ The Exon-Intron Database
  http://www.ncbi.nlm.nih.gov/RefSeq/ NCBI – Reference Sequence
  http://genome.ucsc.edu/ UC – Santa Cruz – Genome Bioinformatics
Protein http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein NCBI – Entrez-Protein
  http://pir.georgetown.edu/ Protein Information Resource
  http://www.expasy.org/sprot Swiss-Prot
  http://www.expasy.org/prosite PROSITE
  http://www.ebi.ac.uk/proteome/ EMBL-EBI – Proteome Analysis
  http://www.expasy.org/ch2d/ Swiss-2DPAGE
2. Signalling Pathways
  http://www.geneontology.org/ Gene Ontology Consortium
  http://www.genome.ad.jp/kegg Kyoto Encyclopedia of Genes and Genomes
  http://www.biocarta.com/ BioCarta
3. Human and non-human vertebrate genomes
  http://www.tigr.org/tdb/tgi.shtml The Institute for Genomic Research Gene Indices
  http://genome.ucsc.edu/ UC – Santa Cruz – Genome Bioinformatics
  http://www.sanger.ac.uk/HGP/ The Sanger Institute: Human Genome Project
  http://www.ensembl.org/ Ensembl Genome Browser
  http://genome.wustl.edu/ Washington U St. Louis Genome Sequencing Center
  http://www.ncbi.nlm.nih.gov/LocusLink NCBI – LocusLink
  http://www.gdb.org/ The Genome Database
  http://www.ncbi.nlm.nih.gov/SNP/ NCBI – Single Nucleotide Polymorphism database
  http://www.genelynx.org GeneLynx
  http://www.ncbi.nih.gov/IEB/Research/Acembly/index.html NCBI – Acembly/AceView
  http://gai.nci.nih.gov/html-snp/imagemaps.html NCI-CGAP – Comprehensive SNP Imagemaps
  http://www.informatics.jax.org/ Mouse Genome Informatics
  http://rgd.mcw.edu/ Rat Genome Database
  http://genome.jgi-psf.org/fugu6/fugu6.home.html Doe Joint Genome Institute (Fugu genome resource)
4. Human Genes and Diseases
  http://Bioinfo.weizmann.ac.il/cards/ GeneCards™
  http://www.ncbi.nlm.nih.gov/Omim/ NCBI – Online Mendelian Inheritance in Man
5. Microarray and Gene Expression Databases
SAGE http://www.sagenet.org/ SAGEnet
  http://www.ncbi.nlm.nih.gov/SAGE/ NCBI – SAGEmap
  http://cgap.nci.nih.gov/SAGE NCI-CGAP – SAGE Genie
Microarray http://www.ebi.ac.uk/arrayexpress EMBL-EBI – ArrayExpress
  http://bodymap.ims.u-tokyo.ac.jp/ BODYMAP
  http://hugeindex.org/ Human Gene Expression Index
  http://genome-www5.stanford.edu Stanford Microarray Database
  http://www.longhornarraydatabase.org/ Longhorn Array Database
6. Cytogenetics
  http://www.wiley.com/legacy/products/subject/life/mitelman/ Mitelman's Catalog of Chromosome Aberrations in Cancer
  http://www.ncbi.nlm.nih.gov/sky/skyweb.cgi NCBI – SKY/M-FISH GH Database
  http://amba.charite.de/cgh/ Charité – Comparative Genomic Hybridization
  http://www.infobiogen.fr/services/chromcancer/ Atlas Chromosomes in Cancer
  http://www.progenetix.net/ Progenetix – Online CGH Database
  http://www.helsinki.fi/cmg/ Laboratory of Cytomolecular Genetics (CMG)
7. Molecular Cancer Sites
  http://cgap.nci.nih.gov/ NCI-CGAP (Cancer Genome Anatomy Project)
   The Tumor Gene Database