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Table 2 Putative promoter regions and CpG island predictions.

From: A cluster of genes located in 1p36 are down-regulated in neuroblastomas with poor prognosis, but not due to CpG island methylation

Gene Promoter region CpG island Amplified region
UBE4B -1212 to -492 -1157 to -150 -959 to -494
KIF1B -22392 to -21141 -22444 to -20935 -22517 to -21874
PGD -185 to +7 -680 to +728 -157 to +144
APITD1a -250 to +30 -389 to +643 -418 to +321
DFFA +65 to +264 -164 to +256 -266 to +142
PEX14 - -2806 to -2362 -2752 to -2481
  1. a For APITD1, the methylation status was analyzed for three different fragments. Column 2: Putative promoter regions according to Genomatix Promoter Inspector software. No promoter region was detected in PEX14. Column 3: CpG island prediction by MethPrimer (for CpG island criteria, see materials and methods). Column 4: Region amplified with the primers used in this study.