Table 2 Genes in amplicons of chromosome 2, 8 and 20.
Genes in amplicon of Chromosome 20 | |||||||
|---|---|---|---|---|---|---|---|
Unigene ID | Gene symbol | Position (Kb)* | Genomic values | Expression values | Genetic data** | Expression data** | |
20p13 | Hs.356727 | FKBP1A | - | 1,918 | 4,022 | 0,940 | 2,008 |
Hs.155140 | CSNK2A1 | 451 | n.d. | 1,678 | n.d | 0,747 | |
Hs.156114 | PTPNS1 | 1,505 | 1,635 | 0,868 | 0,709 | -0,205 | |
Hs.26045 | PTPRA | 2,832 | 1,279 | 0,251 | 0,355 | -1,997 | |
Hs.89648 | AVP | 3,051 | n.d. | 1,274 | n.d | 0,349 | |
Hs.85004 | CENPB | 3,753 | 1,703 | 1,169 | 0,768 | 0,226 | |
Hs.153752 | CDC25B | 3,765 | 2,122 | 1,761 | 1,079 | 0,811 | |
Hs.80905 | RASSF2 | 4,748 | 1,25 | 0,981 | 0,322 | -0,028 | |
Hs.78996 | PCNA | 5,083 | 1,694 | 8,187 | 0,760 | 3,033 | |
Hs.2281 | CHGB | 5,880 | n.d. | 0,855 | n.d | -0,226 | |
Hs.73853 | BMP2 | 6,737 | 2,694 | n.d. | 1,430 | n.d | |
Hs.91143 | JAG1 | 10,606 | 1,89 | 0,953 | 0,918 | -0,069 | |
Hs.44296 | FLJ22324 | 13,761 | 1,543 | 2,292 | 0,626 | 1,197 | |
Hs.82306 | ADF | 17,538 | 1,43 | 0,475 | 0,516 | -1,075 | |
Hs.268281 | CRN | 20,003 | 1,458 | 1,034 | 0,544 | 0,048 | |
Hs.2030 | THBD | 23,016 | 1,655 | 0,572 | 0,727 | -0,806 | |
Hs.1872 | PCK1 | 24,899 | 1,482 | 0,824 | 0,568 | -0,279 | |
Hs.274264 | VSX1 | 25,044 | 1,67 | 1,682 | 0,740 | 0,750 | |
Hs.75424 | ID1 | 29,981 | 3,825 | 1,640 | 1,935 | 0,714 | |
20q11 | Hs.305890 | BCL2L1 | 30,040 | 6,941 | 11,508 | 2,795 | 3,525 |
Genes in amplicon of chromosome 2 | |||||||
Unigene ID | Gene symbol | Position (Kb)* | Genomic values | Expression values | Genomic data** | Expression data** | |
2q34 | Hs.54089 | BARD1 | 218,722 | 0,734 | 1,646 | -0,446 | 0,719 |
Hs.84981 | XRCC5 | 220,094 | 1,823 | 2,815 | 0,856 | 1,341 | |
Hs.162 | IGFBP2 | 220,592 | 2,563 | 4,544 | 1,358 | 2,184 | |
Hs.107169 | IGFBP5 | 220,635 | 2,034 | 0,820 | 1,024 | -0,285 | |
Hs.38125 | IFI75 | 224,000 | 1,342 | 1,664 | 0,413 | 0,647 | |
Hs.309943 | SP140 | 224,057 | 1,45 | 0,646 | 0,536 | -0,631 | |
Hs.83583 | ARPC2 | 226,590 | 1,058 | 0,648 | 0,081 | -0,626 | |
Hs.166068 | VIL1 | 226,796 | 1,025 | 1,463 | 0,036 | 0,549 | |
Hs.82568 | CYP27A1 | 227,154 | 1,676 | 0,764 | 0,745 | -0,388 | |
Hs.88049 | PRKAG3 | 227,195 | 2,091 | 0,436 | 1,064 | -1,196 | |
Hs.153003 | STK16 | 227,618 | 1,657 | 1,272 | 0,729 | 0,347 | |
Hs.75318 | TUBA1 | 227,622 | 1,631 | 5,622 | 0,706 | 2,491 | |
Hs.77768 | DNAJB2 | 227,652 | 1,82 | 0,841 | 0,864 | -0,250 | |
Hs.89655 | PTPRN | 227,662 | 1,659 | 1,447 | 0,730 | 0,533 | |
Hs.48291 | PDE6D | 227,901 | 1,122 | 0,520 | 0,166 | -0,943 | |
Hs.1734 | INHA | 228,352 | 1,187 | 0,849 | 0,247 | -0,237 | |
Hs.198 | PAX3 | 230,984 | 1,677 | 1,504 | 0,746 | 0,589 | |
Hs.78946 | CUL3 | 233,252 | 1,18 | 0,997 | 0,239 | -0,004 | |
Hs.75498 | SCYA20 | 236,823 | 1,347 | 0,293 | 0,430 | -1,769 | |
Hs.91400 | HDAC4 | 243,313 | 1,26 | 0,543 | 0,333 | -0,881 | |
Hs.36587 | PPP1R7 | 244,757 | 0,907 | 1,859 | -0,141 | 0,895 | |
2q37 | Hs.5345 | RNPEPL1 | 245,348 | 1,488 | 0,949 | 0,573 | -0,076 |
2q35 | Hs.82793 | PSMB3 | - | 1,794 | 3,874 | 0,843 | 1,954 |
Genes in amplicon of chromosome 8 | |||||||
Unigene ID | Gene symbol | Position (Kb)* | Genomic values | Expression values | Genomic data** | Expression data** | |
8q23 | Hs.114218 | FZD6 | 105,144 | 0,980 | 0,621 | -0,030 | -0,717 |
Hs.86905 | ATP6C | 105,407 | 1,067 | 0,918 | 0,094 | -0,123 | |
Hs.82173 | TIEG | 105,820 | 1,277 | 0,842 | 0,353 | -0,248 | |
Hs.94262 | p53R2 | 106,237 | 1,324 | 0,564 | 0,369 | -0,831 | |
Hs.2463 | ANGPT1 | 109,654 | 1,745 | n.d | 0,803 | n.d. | |
Hs.106673 | EIF3S6 | 111,104 | 1.170 | 0.402 | 0.227 | -1.314 | |
Hs.58189 | EIF3S3 | 119,873 | 1,097 | 0,566 | 0,130 | -0,885 | |
Hs.184161 | EXT1 | 121,031 | 1,260 | 3,592 | 0,333 | 1,845 | |
Hs.174185 | ENPP2 | 122,788 | 1,223 | 0,891 | 0,290 | -0,167 | |
Hs.12940 | ZHX1 | 127,568 | 1,212 | 1,309 | 0,277 | 0,389 | |
Hs.61661 | - | 127,822 | 1,101 | 1,318 | 0,139 | 0,399 | |
Hs.181107 | ANXA13 | 127,989 | 1,333 | 0,655 | 0,415 | -0,611 | |
Hs.344478 | KIAA0196 | 129,211 | 1,302 | n.d | 0,381 | n.d | |
Hs.79070 | MYC | 132,293 | 1,883 | 1,597 | 0,853 | 0,630 | |
Hs.305916 | TG | 136,747 | 1,441 | 1,711 | 0,527 | 0,775 | |
Hs.75789 | NDRG1 | 137,117 | 1,617 | 1,140 | 0,693 | 0,190 | |
Hs.157240 | MGC4737 | 143,611 | 1,722 | 0,828 | 0,784 | -0,273 | |
Hs.740 | PTK3 | 144,545 | 1,896 | 0,939 | 0,914 | -0,487 | |
Hs.77667 | LY6E | 146,427 | 1,595 | 2,410 | 0,674 | 1,269 | |
Hs.301118 | CYP11B1 | 146,498 | 1,619 | 1,227 | 0,695 | 0,295 | |
Hs.348605 | - | 146,918 | 1,309 | 0,826 | 0,388 | -0,276 | |
Hs.264428 | TSTA3 | 147,413 | 1,365 | 0,693 | 0,449 | -0,530 | |
Hs.223241 | EEF1D | 147,485 | 1,554 | 3,142 | 0,636 | 1,651 | |
Hs.323834 | NFKBIL2 | 147,600 | 1,375 | 4,436 | 0,459 | 2,149 | |
Hs.339697 | LOC51160 | 147,616 | 1,418 | 1,546 | 0,504 | 0,629 | |
Hs.31442 | RECQL4 | 147,653 | 1,458 | 3,419 | 0,544 | 1,774 | |
Hs.12271 | - | 147,813 | 1,640 | 2,034 | 0,714 | 1,024 | |
Hs.92679 | - | 147,876 | 1,178 | 1,510 | 0,236 | 0,595 | |
8q24 | Hs.331601 | - | 147,927 | 2,138 | 1,077 | 1,096 | 0,107 |