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Table 2 Genes in amplicons of chromosome 2, 8 and 20.

From: Identification of amplified and highly expressed genes in amplicons of the T-cell line huT78 detected by cDNA microarray CGH

Genes in amplicon of Chromosome 20
  Unigene ID Gene symbol Position (Kb)* Genomic values Expression values Genetic data** Expression data**
20p13 Hs.356727 FKBP1A - 1,918 4,022 0,940 2,008
  Hs.155140 CSNK2A1 451 n.d. 1,678 n.d 0,747
  Hs.156114 PTPNS1 1,505 1,635 0,868 0,709 -0,205
  Hs.26045 PTPRA 2,832 1,279 0,251 0,355 -1,997
  Hs.89648 AVP 3,051 n.d. 1,274 n.d 0,349
  Hs.85004 CENPB 3,753 1,703 1,169 0,768 0,226
  Hs.153752 CDC25B 3,765 2,122 1,761 1,079 0,811
  Hs.80905 RASSF2 4,748 1,25 0,981 0,322 -0,028
  Hs.78996 PCNA 5,083 1,694 8,187 0,760 3,033
  Hs.2281 CHGB 5,880 n.d. 0,855 n.d -0,226
  Hs.73853 BMP2 6,737 2,694 n.d. 1,430 n.d
  Hs.91143 JAG1 10,606 1,89 0,953 0,918 -0,069
  Hs.44296 FLJ22324 13,761 1,543 2,292 0,626 1,197
  Hs.82306 ADF 17,538 1,43 0,475 0,516 -1,075
  Hs.268281 CRN 20,003 1,458 1,034 0,544 0,048
  Hs.2030 THBD 23,016 1,655 0,572 0,727 -0,806
  Hs.1872 PCK1 24,899 1,482 0,824 0,568 -0,279
  Hs.274264 VSX1 25,044 1,67 1,682 0,740 0,750
  Hs.75424 ID1 29,981 3,825 1,640 1,935 0,714
20q11 Hs.305890 BCL2L1 30,040 6,941 11,508 2,795 3,525
Genes in amplicon of chromosome 2
  Unigene ID Gene symbol Position (Kb)* Genomic values Expression values Genomic data** Expression data**
2q34 Hs.54089 BARD1 218,722 0,734 1,646 -0,446 0,719
  Hs.84981 XRCC5 220,094 1,823 2,815 0,856 1,341
  Hs.162 IGFBP2 220,592 2,563 4,544 1,358 2,184
  Hs.107169 IGFBP5 220,635 2,034 0,820 1,024 -0,285
  Hs.38125 IFI75 224,000 1,342 1,664 0,413 0,647
  Hs.309943 SP140 224,057 1,45 0,646 0,536 -0,631
  Hs.83583 ARPC2 226,590 1,058 0,648 0,081 -0,626
  Hs.166068 VIL1 226,796 1,025 1,463 0,036 0,549
  Hs.82568 CYP27A1 227,154 1,676 0,764 0,745 -0,388
  Hs.88049 PRKAG3 227,195 2,091 0,436 1,064 -1,196
  Hs.153003 STK16 227,618 1,657 1,272 0,729 0,347
  Hs.75318 TUBA1 227,622 1,631 5,622 0,706 2,491
  Hs.77768 DNAJB2 227,652 1,82 0,841 0,864 -0,250
  Hs.89655 PTPRN 227,662 1,659 1,447 0,730 0,533
  Hs.48291 PDE6D 227,901 1,122 0,520 0,166 -0,943
  Hs.1734 INHA 228,352 1,187 0,849 0,247 -0,237
  Hs.198 PAX3 230,984 1,677 1,504 0,746 0,589
  Hs.78946 CUL3 233,252 1,18 0,997 0,239 -0,004
  Hs.75498 SCYA20 236,823 1,347 0,293 0,430 -1,769
  Hs.91400 HDAC4 243,313 1,26 0,543 0,333 -0,881
  Hs.36587 PPP1R7 244,757 0,907 1,859 -0,141 0,895
2q37 Hs.5345 RNPEPL1 245,348 1,488 0,949 0,573 -0,076
2q35 Hs.82793 PSMB3 - 1,794 3,874 0,843 1,954
Genes in amplicon of chromosome 8
  Unigene ID Gene symbol Position (Kb)* Genomic values Expression values Genomic data** Expression data**
8q23 Hs.114218 FZD6 105,144 0,980 0,621 -0,030 -0,717
  Hs.86905 ATP6C 105,407 1,067 0,918 0,094 -0,123
  Hs.82173 TIEG 105,820 1,277 0,842 0,353 -0,248
  Hs.94262 p53R2 106,237 1,324 0,564 0,369 -0,831
  Hs.2463 ANGPT1 109,654 1,745 n.d 0,803 n.d.
  Hs.106673 EIF3S6 111,104 1.170 0.402 0.227 -1.314
  Hs.58189 EIF3S3 119,873 1,097 0,566 0,130 -0,885
  Hs.184161 EXT1 121,031 1,260 3,592 0,333 1,845
  Hs.174185 ENPP2 122,788 1,223 0,891 0,290 -0,167
  Hs.12940 ZHX1 127,568 1,212 1,309 0,277 0,389
  Hs.61661 - 127,822 1,101 1,318 0,139 0,399
  Hs.181107 ANXA13 127,989 1,333 0,655 0,415 -0,611
  Hs.344478 KIAA0196 129,211 1,302 n.d 0,381 n.d
  Hs.79070 MYC 132,293 1,883 1,597 0,853 0,630
  Hs.305916 TG 136,747 1,441 1,711 0,527 0,775
  Hs.75789 NDRG1 137,117 1,617 1,140 0,693 0,190
  Hs.157240 MGC4737 143,611 1,722 0,828 0,784 -0,273
  Hs.740 PTK3 144,545 1,896 0,939 0,914 -0,487
  Hs.77667 LY6E 146,427 1,595 2,410 0,674 1,269
  Hs.301118 CYP11B1 146,498 1,619 1,227 0,695 0,295
  Hs.348605 - 146,918 1,309 0,826 0,388 -0,276
  Hs.264428 TSTA3 147,413 1,365 0,693 0,449 -0,530
  Hs.223241 EEF1D 147,485 1,554 3,142 0,636 1,651
  Hs.323834 NFKBIL2 147,600 1,375 4,436 0,459 2,149
  Hs.339697 LOC51160 147,616 1,418 1,546 0,504 0,629
  Hs.31442 RECQL4 147,653 1,458 3,419 0,544 1,774
  Hs.12271 - 147,813 1,640 2,034 0,714 1,024
  Hs.92679 - 147,876 1,178 1,510 0,236 0,595
8q24 Hs.331601 - 147,927 2,138 1,077 1,096 0,107
  1. Areas of genomic gain presenting the highest values are shown in bold. Note that in 20p amplicon, the entire region is gained, but only the highest values are indicated. Underlined are gained and overexpressed genes. * Map location according to the EnsMBL database (with exception of FKBP1A and PSMB3 genes that are FISH mapped); ** Log2 values; n.d. No data.