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Table 5 Genes that were identified by SAM in both (T - N) and (CL - N) comparisons but not in (CL - T) comparisons; (T - N ∩ CL - N) – (T - N ∩ CL - N ∩ CL - T).

From: Pathway-specific differences between tumor cell lines and normal and tumor tissue cells

Breast CNS Colon Ovary Prostate Renal
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GALNS APP ACTB ATP5O ARD1A ADH1B MCM2 ACTG2   APOD   ADH1B
GP9 AQP1 CPSF1 COX7A1 ARPC1B BRD2   AEBP1   CCND2   ALDH4A1
LCAT ARHGEF6 DDX11 CTNNB1 BCAT1 C7   C7   CXCL12   ANPEP
RND2 ATP6V1B2 ECE1 GYPE CCND1 CA2   CEBPD   KCNMB1   ASS
  BRD2 EEF1A1 ITGB7 CPNE1 CALCOCO2   CNN1   MATN2   ATP6V1B1
  CTNNB1 EEF1G KIAA0513 CUL7 CASC3   DPYSL2   PTGDS   C7
  CXCL12 FRAP1 MEF2C ERCC1 CES2   DUSP1   PTN   CLCNKB
  DUSP1 GNAI2 MRPS21 GPS1 CHGA   EGR1   SERPING1   ENG
  EGR1 GNB1 MYOM2 MDK CLEC3B   FOS   SPARCL1   EPHX2
  EGR3 GNB2 PCP4 PDXK CNN1   GYPC     FABP1
  IGFBP4 GPIAP1 PVALB PEX6 CRYAB   IGFBP5     GATA3
  JUND GPS1 S100A1 PHLDA2 CTNNB1   JUNB     GATM
  KHSRP H3F3B SEPP1 S100A11 CUGBP2   LMOD1     GPX3
  KIT HNRPF SERPINI1 TEAD4 DMD   LUM     GSTA2
  KRT15 KHDRBS1    DPYSL2   MYH11     HMGCS2
  KRT5 MAZ    FABP4   MYLK     HPD
  MXI1 NONO    FCGBP   NDN     KCNJ1
  MYH11 ODC1    FGFR2   NR4A1     MT1G
  NFIB PCBP2    FHL1   PPAP2B     MT1X
  NSMAF RAB7    GDI1   SEPP1     PAH
  PCBP1 RBM10    GPD1L   SERPINF1     PALM
  SERPINA3 RBM5    HMGCS2   SPARCL1     PCK2
  SNTB2 RHOB    HSD11B2   TNXB     PRODH2
  SOX9 SMARCA4    HSPA1A   ZBTB16     PTHR1
  SPARCL1 SRM    IL11RA   ZFP36     SERPINA5
  VWF TRIM28    IL6R       TACSTD1
  ZFP36 TUBB    ITGA7       UGT2B7
   UFM1    ITPKB       UMOD
   YBX1    LMOD1       
      LPL       
      MAOA       
      NFIB       
      NR3C2       
      PCK1       
      PLN       
      PPAP2B       
      PPP1R1A       
      PRKCB1       
      SEPP1       
      SLC26A3       
      SMTN       
      SPIB       
      SRPX       
      TACR2       
      TGFBR3       
      TPM1       
      TPM2       
      TSPAN7       
      TUBA3       
      ZBTB16