Primers | Location | Analytical purpose | Forward Primer | Reverse Primer | Size (bp) |
---|---|---|---|---|---|
PHF2 Ex-18 | 9q22.32 | HD/HED | 5'-ACTCCTGCCTGCAGACCAC-3' | 5'-CCTGCTCTTCCTCGTAGTCG-3' | 168 |
FANCC Ex-2 | 9q22.32 | HD/HED | 5'-TGGCTCAAGATTCAGTAGATCTTTC-3' | 5'-TTTCAAGGCTTCATACATCTTCC-3' | 158 |
PHF2 promoter | -893 to -670 region | Methylation | 5'-GTGGTGTCCCAACCAGAAAC-3' | 5'-GGGACCCCGAGGATAAGATA-3' | 223 |
FANCC promoter | -319 to -144 region | Methylation | 5'-TTTTACCCCGTTGACAAAGC-3' | 5'-CGGTACTGCTCCAGTGTTCC-3' | 175 |
PTCH1 promoter | -715 to -420 region | Methylation | 5'-CGAGGAGCACAAGAAAGCAG-3' | 5'-AGAAAGAGCCAGCGAATCC-3' | 295 |
XPA promoter Ex.1 | -126 to +56 region | Methylation | 5'-AGGCGCTCTCACTCAGAAAG-3' | 5'-TCCGCGGGTTGCTCTAAA-3' | 182 |
PTCH1 Ex.*23 | Intron 22–23 to Ex.23 | SSCP | 5'-TCTAACCCACCCTCACCCTC-3' | 5'-ATTGCTAGGGCCAGAATGCC-3' | 226 |
PTCH1 Ex.23 | Ex.23 to Intron 23–24 | SSCP | 5'-TTCTGCCTCCGTGACTGTC-3' | 5'-CTCTAGGTCCCTTGGCTGC-3' | 265 |
PHF2 Ex. 18–19 | Coding regions of exons | Q-PCR | 5'-ACTCCTGCCTGCAGACCAC-3' | 5'-TCGACCGGGACTTAAAGATG-3' | 257 |
FANCC Ex. 7–8 | Coding regions of exons | Q-PCR | 5'-TGGAGGCTCTCCTCATCTGT-3' | 5'-GCATTCGATCCTTCTCAGACA-3' | 223 |
PTCH1 Ex. 1–2 | Coding regions of exons | Q-PCR | 5'-GACCGGGACTATCTGCA-3' | 5'-GAGGAGGCCCACAACC-3' | 186 |
β2 Microglobulin | 15q21-q22.2 | Q-PCR | 5'-GTGCTCGCGCTACTCTCTCT-3' | 5'-TCAATGTCGGATGGATGAAA-3' | 153 |
β-3A-adaptin (K1*) | 5q14.1 | DNA cleavage control | 5'-TGCCCTCTGGACTGGAACCT-3' | 5'-CCTGAGCCCAGCCCAAGTC-3' | 445 |
RARβ2 (K2**) | 3p24.2 | DNA integrity control | 5'-AGAGTTTGATGGAGTTGGGT-3' | 5'-CATTCGGTTTGGGTCAATCC-3' | 229 |