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Table 1 The 31 probe sets (29 genes) in Rapamycin Metagene Index listed by probe set identifier.

From: The rapamycin-regulated gene expression signature determines prognosis for breast cancer

Probe set ID

Gene symbol

Gene title

Included in HG-U133 array

202050_s_at

ZMYM4

Zinc finger, MYM-type 4

Yes

202623_at

C14orf1

E2F-associated phosphoprotein

Yes

203985_at

ZNF212

Zinc finger protein 212

Yes

204279_at

PSMB9

Proteasome (prosome, macropain) subunit, beta type, 9 (large multifunctional protease 2)

Yes

204985_s_at

MGC2650

Trafficking protein particle complex 6A

Yes

208669_s_at

CRI1

CREBBP/EP300

Yes

209101_at

CTGF

Connective tissue growth factor

Yes

209102_s_at

HBP1

HMG-box transcription factor 1

Yes

209216_at

WDR45

WD repeat domain 45

Yes

210296_s_at

PXMP3

Peroxisomal membrane protein 3, 35 kDa (Zellweger syndrome)

Yes

211284_s_at

GRN

Granulin

Yes

214177_s_at

PBXIP1

Pre-B-cell leukemia transcription factor-interacting protein 1

Yes

215464_s_at

TAX1IP3

Tax1 (human T-cell leukemia virus type I)-binding protein 3

Yes

216041_x_at

GRN

Granulin

Yes

217906_at

KLHDC2

Kelch domain containing 2

Yes

218550_s_at

LRRC20

Leucine-rich repeat containing 20

Yes

219630_at

MAP17

PDZK1-interacting protein 1

Yes

221087_s_at

APOL3

Apolipoprotein L, 3

Yes

221476_s_at

RPL15

Ribosomal protein L15

Yes

46256_at

SSB3

SPRY domain-containing SOCS box protein SSB-3

Yes

1555852_at

-

-

No

222574_s_at

DHX40

DEAH (Asp-Glu-Ala-His) box polypeptide 40

No

222802_at

EDN1

Endothelin 1

No

223042_s_at

FUNDC2

FUN14 domain-containing 2

No

223493_at

FBXO4

F-box protein 4

No

224564_s_at

RTN3

Reticulon 3

No

224785_at

MGC29814

Hypothetical protein MGC29814

No

225076_s_at

KIAA1404

Zinc finger, NFX1-type containing 1

No

225898_at

WDR54

WD repeat domain 54

No

226157_at

TFDP2

Transcription factor Dp-2 (EF2 dimerization partner 2)

No

227475_at

FOXQ1

Forkhead box Q1

No

  1. ID, identifier.