Event | Chr | Treatment | Differentially expressed genes located in the MCR | ||
---|---|---|---|---|---|
Radiation therapy | |||||
% in NR | % in R | p-value | |||
Loss | 5p15.3 | 0 | 33 | 0.04 | |
Loss | 5p15.2-3 | 0 | 29 | 0.01 | CMBL (FC = 1.3) |
Gain | 17q24-25 | 22 | 0 | 0.02 | TANC2 (FC = 1.1), DCAF7 (FC = 1.2), LRRC37A (FC = 1.3), PITPNC1 (FC = 1.6) |
Chemotherapy | |||||
% in NR | % in R | p-value | |||
Amp. | 7p11.2 | 0.35 | 0.81 | 0.02 | |
Del. | 9p21.3 | 0 | 0.82 | < 10-4 | MTAP (FC = 2), CDKN2A (FC = 2.6) |
Loss | 9p24 | 0.12 | 0.64 | 0.01 | |
Loss | 9p24 | 0.12 | 0.64 | 0.01 | KIAA1432 (FC = 1.4), KDM4C (FC = 1.2) |
Loss | 9p24;p23;p22 | 0.12 | 0.64 | 0.01 | ZDHHC21 (FC = 1.6) |
Gain | 11p15 | 0.18 | 0.64 | 0.02 | PGAP2 (FC = 0.8) |
Gain | 11q13 | 0.18 | 0.91 | 0.0003 | C11orf68 (FC = 0.8), B3GNT1 (FC = 0.75), RAB1B (FC = 0.86) |
Gain | 17p13 | 0.18 | 0.64 | 0.02 | CRK (FC = 0.83), INPP5K (FC = 0.88), TSR1 (FC = 0.87), METT10 D (FC = 0.77), SGSM2(FC = 0.75) |
Gain | 17p13 | 0.18 | 0.64 | 0.02 | METT10 D (FC = 0.77) |
Gain | 19p13.3 | 0.35 | 0.91 | 0.006 | PPAP2C (FC = 0.74), SHC2 (FC = 0.8), MOBKL2A (FC = 0.81), SCAMP4 (FC = 0.8), BTBD2 (FC = 0.8), FAM108A1 (0.86), SF3A2 (FC = 0.74), AP3D1 (0.77), GNG7 (0.46), ZNF555 (0.82), DOHH (0.82), C19orf29 (0.8), NFIC (0.75) |
Gain | 19p13.3;p13.2;p13.1 | 0.29 | 0.91 | 0.002 | SLC25A23 (0.6), CLEC4 M (0.85), ZNF846 (0.7), OLFM2 (0.6), S1PR2 (0.8), DHPS (0.85), TNPO2 (0.76), ZNF791 (0.77) |
Gain | 19p13.1 | 0.29 | 0.91 | 0.002 | EPS15L1 (0.83), OCEL1 (0.85), TMEM161A (0.82), NCAN (0.3) |
Gain | 19p12 | 0.29 | 0.91 | 0.002 | |
Gain | 19p12;p11 | 0.29 | 0.91 | 0.002 | |
Gain | 19q11;q12 | 0.29 | 0.82 | 0.002 | FXYD3 (0.84) |
Gain | 19q12; q13.1 | 0.35 | 0.91 | 0.006 | FAM98C (0.77) |
Gain | 20p13 | 0.12 | 0.82 | 0.0004 | ZCCHC3 (0.81), SOX12 (0.84), RBCK1 (0.8), CSNK2A1 (0.81), MAVS (0.8), ATRN (0.76) |
Gain | 20p12.3; p11.2 | 0.18 | 0.64 | 0.002 | RRBP1 (0.73) |
Gain | 20p11.2 | 0.12 | 0.64 | 0.003 | |
Gain | 20p11.2; p11.1; q11.1;q11.2 | 0.24 | 0.73 | 0.02 | CST8 (0.87) |
Gain | 20q11.2 | 0.24 | 0.82 | 0.006 | PLUNC (0.88), CHMP4B (0.83) |
Gain | 20q11.2 | 0.24 | 0.82 | 0.006 | CHMP4B (0.83), LOC647979 (0.67) |
Gain | 20q11.2;q12 | 0.18 | 0.73 | 0.006 | SNHG11 (0.75) |
Gain | 20q13.1 | 0.18 | 0.73 | 0.006 | SLC13A3 (0.81) |
Gain | 20q13.1 | 0.24 | 0.73 | 0.02 | PREX1 (0.72) |
Gain | 20q13.3 | 0.24 | 0.73 | 0.02 | CDH4 (0.5), OSBPL2 (0.82) |