Table 1 PCR primers used in ChIP and HaloCHIP experiments.
Gene (promoter region) | Primer oligonucleotides (5'-3') |
|---|---|
TFIIIC220* | Forward: GTTTGCAGTTCCCCTGGTTAC Reverse: CTTCGTCCAACAACGACTCC |
TFIIIC110* | Forward: TCTCCCCTTTTTGACACTGC Reverse: AGGGGGAGGAGTAATTGTGG |
TFIIIC102 | Forward: CGGTTCCTTGCTCTTGCT Reverse: GCATCGCCTCACTTTCTT |
TFIIIC90 | Forward: GCGGGTAGGGACAAGACT Reverse: CCCAGACAGGCTTTAGTT |
TFIIIC63 | Forward: GCCAACACCGACAGAATA Reverse: CGGAGGATAATAAGACACAAA |
5S RNA | Forward: TTTACGGCCACACCACCCTG Reverse: AAAGCCTTCAGCACCCTGTA |
tRNAtyr | Forward: CCTTCGATAGCTCAGCTGGTAGAGCGGAGG Reverse: CGGAATTGAACCAGCGACCTAAGGATGTCC |
7SL RNA (gene) | Forward: GTGTCCGCACTAAGTTCGGCATCAATATGG Reverse: TATTCACAGGCGCGATCCCACTACTGATC |
7SL RNA†(upstream promoter) | Forward: CCGTGGCCTCCTCTACTTG Reverse: TTTACCTCGTTGCACTGCTG |
Brf1 | Forward: GCAAGGAGGTCAGGCACT Reverse: CCTTCCACGGCTACCTCT |
Bdp1 | Forward: GTTTCTTCACACCAGCATT Reverse: GCTACTGAGACTGGGTTA |
TBP | Forward: CGCCCCTCCTTACCTAT Reverse: CAATCTGTTACCTGGGTC |
ATF-2 | Forward: CCCAAACCTCACCTAACCCGAAG Reverse: CTCGGGCGCTCATGATTGGACAA |
c-myc | Forward: TCCTCTCTCGCTAATCTCCGC Reverse: CCCTCCGTTCTTTTTCCCG |
c-jun | Forward: CCCACAAGTGGGGAAACAACAA Reverse: GCTACCAGTCAACCCCTAAAAATA |
GAPDH | Forward: TACTAGCGGTTTTACGGGCG Reverse: TCGAACAGGAGGAGCAGAGAGCGA |
EBV-DS | Forward: CCGTGACAGCTCATGGGGTGGGAGAT Reverse: CAATCAGAGGGGCCTGTGTAGCTACCG |
EBERs | Forward: CCGCCTACACACCAACTAT Reverse: GGGATTAGAGAATCCTGACTT |