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Table 3 Transition features and the presumably regulated proteins

From: Malignant transformation in a defined genetic background: proteome changes displayed by 2D-PAGE

transition

transition feature

genes presumably up-regulated proteins

genes presumably down-regulated proteins

BJ → BJ-T

(hTERT)

prevention of senescence

ACTB, ANXA2, LDHB, M6PRBP1, NPM1, SERPINB2

PRDX6

BJ-T → BJ-TE

(SV40)

proliferation and prevention of apoptosis

HEXB, IL1B, MAPRE1, PCNA, PPME1, PSMA3, RANBP1, RPS3A, SLC25A24, TBCB, TRAP1

ACTB, AHCY, ALDH1A1, ANXA2, EIF4A1,

FAM129B, G6PD, GSN, HNRPH3, HSPB1,

IFIT2, ILF2, IMPDH2, IPI00410404,

KRT7, LAP3, LMNA, M6PRBP1, SFRS9,

MAP2K2, PACSIN2, PHGDH, PPME1, PRDX6,

PRPF19, SLC25A24, TARDBP, TBCE, TRAF5, VIM

BJ-TE → BJ-TER

(RAS)

prevention of anoikis and growth-factor indepandancy

ACTB, EIF4A1, HSP90AA1, HSP90AB1, ILF2, M6PRBP1

EEF1A1, ENO1

  1. The respective transition features and the genes of proteins identified in the spots up- or down-regulated within the transitions are listed. In one case the protein ID is listed. PPME1 and SLC25A24 were identified both in the up-regulated spot 24 and within the same transition these proteins were also identified in two different down-regulated spots. Hence, they are mentioned within the presumably up- and down-regulated proteins of the SV40 ER transition.