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Table 1 Summary of genes methylated within the non-invasive LNCaP and DU145 cell lines

From: Epigenetic regulation of CpG promoter methylation in invasive prostate cancer cells

Gene Agilent ID Location
ABCF3 A_17_P02824570 chr3:185384633-185384688
ACRC A_17_P11784482 chrX:70712439-70712498
ARHGEF9 A_17_P11762981 chrX:62889218-62889272
AVPR1A A_17_P08402446 chr12:61828587-61828646
BCL2A1 A_17_P09781583 chr15:78049283-78049342
BMX A_17_P11607973 chrX:15428990-15429037
CAPN6 A_17_P11887436 chrX:110391469-110391527
CNIH3 A_17_P00830574 chr1:222866130-222866189
DIO3 A_17_P09520078 chr14:101092190-101092234
DLGAP1 A_17_P10514555 chr18:3832861-3832920
DONSON A_17_P11359769 chr21:33880442-33880501
EXOC3L2 A_17_P17147769 chr19:50426839-50426891
GNB1 A_17_P00002239 chr1:1744644-1744703
GPR103 A_17_P03395862 chr4:122518949-122518996
GPR81 A_17_P08659974 chr12:121778515-121778572
GUCY2F A_17_P11879791 chrX:108613896-108613952
HRK A_17_P08637968 chr12:115801241-115801285
hsa-mir-346 A_17_P07370831 chr10:88012234-88012278
hsa-mir-507 A_17_P12010468 chrX:146120196-146120255
hsa-mir-542 A_17_P11969030 chrX:133503290-133503349
HTR2A A_17_P08830482 chr13:46365855-46365914
IRX3 A_17_P10024825 chr16:52875157-52875205
LOC339344 A_17_P10976156 chr19:51085104-51085163
MAGEA8 A_17_P12020625 chrX:148768376-148768435
MYH3 A_17_P10227610 chr17:10497672-10497716
NCAM1 A_17_P08036168 chr11:112332051-112332110
NR2E1 A_17_P04970834 chr6:108588654-108588713
NUP85 A_17_P10465401 chr17:70708211-70708270
PARVB A_17_P11521863 chr22:42723842-42723888
RAMP2 A_17_P10328303 chr17:38161563-38161609
RBBP8 A_17_P10568640 chr18:18762400-18762459
RPS4X A_17_P11786429 chrX:71410283-71410342
SCG3 A_17_P09654436 chr15:49755368-49755423
SCGB1A1 A_17_P07831562 chr11:61937609-61937653
SIGLEC1 A_17_P11026333 chr20:3615793-3615841
SIX1 A_17_P16707873 chr14:60183180-60183224
SLC5A1 A_17_P11476138 chr22:30766279-30766324
SOX1 A_17_P09141969 chr13:111764575-111764619
SPATA5L1 A_17_P09626282 chr15:43477779-43477838
TCF12 A_17_P09676944 chr15:54992977-54993036
TMEM46 A_17_P08732705 chr13:25520762-25520811
TNRC6A A_17_P09967235 chr16:24643725-24643784
VSIG1 A_17_P11874787 chrX:107171900-107171959
ZBTB16 A_17_P08041891 chr11:113430193-113430252
  1. Genes methylated within the non-invasive population of LNCaP and DU145 cell lines. Once extracted from the Chip Analytics software, a list of genes which were methylated in the non-invasive cells, yet not in the invasive population was generated. The Agilent ID corresponds to the probe location on the chromosome