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Table 4 Allele frequency of (CA)n polymorphism in the LIMD1 gene in head and neck cancer cases and control

From: LIMD1 is more frequently altered than RB1 in head and neck squamous cell carcinoma: clinical and prognostic implications

Allele

No of (CA)n repeats

Case

Control

P #

  

No. of alleles

%

No. of alleles

%

 

(CA)9

9

7

2.38

11

2.94

0.6571

(CA)13

13

4

1.36

35

9.36

0.00012

(CA)17

17

23

7.82

46

12.29

0.0592

(CA)19

19

97

32.99

169

45.19

0.00139

(CA)20

20

66

22.45

36

9.63

0.000005

(CA)21

21

21

7.14

15

4.01

0.075134

(CA)24

24

30

10.2

23

6.15

0.05427

(CA)26

26

2

0.68

15

4.01

0.0067

(CA)27

27

19

6.46

13

3.48

0.0728

(CA)30

30

10

3.4

6

1.6

0.1316

(CA)32

32

14

4.76

5

1.34

0.0082

(CA)38

38

1

0.34

0

0

0.259

Total no. of alleles

 

294

100

374

100

 
  

χ2 = 29.175, df = 11, P= 0.0021

 
 

Genotype

Case

%

Control

%

P #

 

(CA)17/(CA)17

6

9.23

11

15.94

0.2434

 

(CA)19/(CA)19

33

50.76

56

81.16

0.0002

 

(CA)20/(CA)20

19

29.23

2

2.89

0.00003

 

(CA)21/(CA)21

5

7.69

0

0

0.0247

 

(CA)24/(CA)24

1

1.54

0

0

0.4851

 

(CA)32/(CA)32

1

1.54

0

0

0.4851

  1. # From Fisher's exact test.
  2. OR, Odds ratio
  3. CI, Confidence interval