Skip to main content

Table 1 MACE and sRNA-seq read statistics

From: Next-generation sequencing reveals novel differentially regulated mRNAs, lncRNAs, miRNAs, sdRNAs and a piRNA in pancreatic cancer

a) MACE      
Condition Sample Raw Reads PCR-Duplicate removed Region of interest Sign. Upreg. RNAs
  N1 20,406,430 11,609,003 7,811,603  
  N2 13,749,503 8,791,698 6,033,792  
Normal N3 17,404,996 10,701,183 7,024,298 963
  N4 14,868,474 9,666,314 6,411,998  
  N5 18,213,260 10,782,506 7,353,927  
  P1 8,706,841 7,921,368 4,377,691  
  P2 9,940,175 8,802,579 4,250,025 1,041
PDAC P3 8,463,912 7,489,546 4,150,706  
  P4 8,438,058 7,612,616 4,422,792  
  P5 13,350,594 11,634,367 5,405,594  
  P6 9,218,757 8,161,312 4,607,707  
b) sRNA-seq      
  N1 19,268,787 9,886,904 6,603,800  
  N2 33,372,333 15,945,439 11,007,400  
Normal N3 22,217,672 11,571,686 7,773,570 45
  N4 27,924,894 6,763,260 5,439,290  
  N5 23,421,799 9,025,877 6,482,120  
  P1 24,349,755 9,837,308 6,887,790  
  P2 15,855,377 6,966,105 5,063,220 78
PDAC P3 19,711,102 9,580,636 6,321,340  
  P4 25,889,624 10,404,479 7,344,910  
  P5 22,130,647 11,117,354 7,402,310  
  P6 19,639,470 8,440,144 5,964,730  
  1. For each sample of control (N) and PDAC (P) tissues the number of raw sequencing reads, PCR duplicate-free reads, reads mapped to regions of interest (exons -MACE or small ncRNAs -sRNA-seq) and the number of deregulated RNAs is provided for MACE and sRNA-seq libraries, respectively.