Skip to main content

Table 3 Differentially expressed lncRNAs

From: Next-generation sequencing reveals novel differentially regulated mRNAs, lncRNAs, miRNAs, sdRNAs and a piRNA in pancreatic cancer

lncRNA

NEV Normal

NEV PDAC

Log2 FC

FDR

Class

Regulation

PED

Other

LINC00671

81.13

0.47

7.45

0.0000000

lincRNA

DOWN

  

DGCR5

83.72

2.89

4.86

0.0000000

lncRNA

DOWN

  

LINC00261

278.16

7.04

5.30

0.0000000

lincRNA

DOWN

 

D [24]

TRHDE-AS1

24.54

1.05

4.54

0.0000015

NAT

DOWN

  

PITPNA-AS1

94.22

16.50

2.51

0.0000085

NAT

DOWN

  

lincRNA

820.02

190.34

2.11

0.0000189

ncRNA

DOWN

  

SNHG9

595.61

149.36

2.00

0.0000217

lincRNA

DOWN

  

lincRNA

27.79

134.36

−2.27

0.0000230

ncRNA

UP

 

U [24]

CEBPA-AS1

37.03

5.21

2.83

0.0000629

NAT

DOWN

  

lincRNA

357.77

90.05

1.99

0.0000661

ncRNA

DOWN

  

SCARNA22

56.28

7.07

2.99

0.0001779

ncRNA

DOWN

  

SCARNA2

27.72

4.21

2.72

0.0002533

ncRNA

DOWN

  

HNF1A-AS1

72.29

10.99

2.72

0.0002943

NAT

DOWN

 

U [26]

SDCBP2-AS1

18.87

1.90

3.31

0.0002948

NAT

DOWN

  

NAT

23.83

3.16

2.91

0.0003537

ncRNA

DOWN

  

NAT

11.60

56.22

−2.28

0.0003752

ncRNA

UP

U

 

LINC00339

355.98

10.67

5.06

0.0004037

lincRNA

DOWN

  

TMEM44-AS1

36.53

7.99

2.19

0.0009294

NAT

DOWN

  

LINC00263

44.69

10.62

2.07

0.0010579

lincRNA

DOWN

  

lncRNA

10.01

46.87

−2.23

0.0011936

ncRNA

UP

U

 

NAPA-AS1

25.94

4.71

2.46

0.0012669

NAT

DOWN

  

LINC00340

4.16

28.42

−2.77

0.0013636

lincRNA

UP

  

EPB41L4A-AS1

303.58

97.66

1.64

0.0015839

NAT

DOWN

  

SERTAD4-AS1

3.19

22.21

−2.80

0.0016944

NAT

UP

  

LHFPL3-AS2

20.61

3.08

2.74

0.0023207

NAT

DOWN

  

LINC00673

8.59

42.30

−2.30

0.0023447

lincRNA

UP

  

DNAJC27-AS1

20.43

3.65

2.49

0.0030115

NAT

DOWN

  

lncRNA

6.87

43.83

−2.67

0.0056448

ncRNA

UP

U

 

BOLA3-AS1

34.96

9.42

1.89

0.0074620

NAT

DOWN

  

ZNF503-AS2

21.89

4.65

2.24

0.0079046

NAT

DOWN

  

ACVR2B-AS1

13.06

1.46

3.16

0.0095731

NAT

DOWN

  

PRRT3-AS1

28.36

7.04

2.01

0.0095911

NAT

DOWN

  

LINC00346

1.41

13.14

−3.22

0.0121525

lincRNA

UP

  

LINC00086

11.86

1.76

2.76

0.0132691

lincRNA

DOWN

  

RUNX1-IT1

2.57

30.23

−3.56

0.0136106

ncRNA

UP

  

THAP7-AS1

29.29

8.11

1.85

0.0198907

NAT

DOWN

  

ZNF503-AS1

11.56

1.93

2.58

0.0240067

NAT

DOWN

  

RNF157-AS1

10.82

1.91

2.50

0.0245309

NAT

DOWN

  

AFAP1-AS1

17.34

153.08

−3.14

0.0265179

NAT

UP

 

U [25]

PSMG3-AS1

24.17

6.92

1.80

0.0291786

NAT

DOWN

  

LINC00578

2.50

13.79

−2.46

0.0404404

lincRNA

UP

  

lncRNA

2,303.62

721.52

1.67

0.0452843

ncRNA

DOWN

D

 

lncRNA

964.77

471.70

1.03

0.0464071

ncRNA

DOWN

  
  1. For each differentially expressed lncRNA (FDR < 0.05) the mean normalized expression values (NEV) for each group is provided together with the ratio between normal and PDAC expression in log2 scale (log2 FC). Furthermore, “Class” indicates the lncRNA type, “PED” the expression as provided by the pancreatic cancer expression database (U: Upregulated in PDAC, D: Downregulated in PDAC) and the last column presents information about the expression level of the RNA in other types of cancer.
Back to article page

Molecular Cancer

ISSN: 1476-4598