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Table 3 Differentially expressed lncRNAs

From: Next-generation sequencing reveals novel differentially regulated mRNAs, lncRNAs, miRNAs, sdRNAs and a piRNA in pancreatic cancer

lncRNA NEV Normal NEV PDAC Log2 FC FDR Class Regulation PED Other
LINC00671 81.13 0.47 7.45 0.0000000 lincRNA DOWN   
DGCR5 83.72 2.89 4.86 0.0000000 lncRNA DOWN   
LINC00261 278.16 7.04 5.30 0.0000000 lincRNA DOWN   D [24]
TRHDE-AS1 24.54 1.05 4.54 0.0000015 NAT DOWN   
PITPNA-AS1 94.22 16.50 2.51 0.0000085 NAT DOWN   
lincRNA 820.02 190.34 2.11 0.0000189 ncRNA DOWN   
SNHG9 595.61 149.36 2.00 0.0000217 lincRNA DOWN   
lincRNA 27.79 134.36 −2.27 0.0000230 ncRNA UP   U [24]
CEBPA-AS1 37.03 5.21 2.83 0.0000629 NAT DOWN   
lincRNA 357.77 90.05 1.99 0.0000661 ncRNA DOWN   
SCARNA22 56.28 7.07 2.99 0.0001779 ncRNA DOWN   
SCARNA2 27.72 4.21 2.72 0.0002533 ncRNA DOWN   
HNF1A-AS1 72.29 10.99 2.72 0.0002943 NAT DOWN   U [26]
SDCBP2-AS1 18.87 1.90 3.31 0.0002948 NAT DOWN   
NAT 23.83 3.16 2.91 0.0003537 ncRNA DOWN   
NAT 11.60 56.22 −2.28 0.0003752 ncRNA UP U  
LINC00339 355.98 10.67 5.06 0.0004037 lincRNA DOWN   
TMEM44-AS1 36.53 7.99 2.19 0.0009294 NAT DOWN   
LINC00263 44.69 10.62 2.07 0.0010579 lincRNA DOWN   
lncRNA 10.01 46.87 −2.23 0.0011936 ncRNA UP U  
NAPA-AS1 25.94 4.71 2.46 0.0012669 NAT DOWN   
LINC00340 4.16 28.42 −2.77 0.0013636 lincRNA UP   
EPB41L4A-AS1 303.58 97.66 1.64 0.0015839 NAT DOWN   
SERTAD4-AS1 3.19 22.21 −2.80 0.0016944 NAT UP   
LHFPL3-AS2 20.61 3.08 2.74 0.0023207 NAT DOWN   
LINC00673 8.59 42.30 −2.30 0.0023447 lincRNA UP   
DNAJC27-AS1 20.43 3.65 2.49 0.0030115 NAT DOWN   
lncRNA 6.87 43.83 −2.67 0.0056448 ncRNA UP U  
BOLA3-AS1 34.96 9.42 1.89 0.0074620 NAT DOWN   
ZNF503-AS2 21.89 4.65 2.24 0.0079046 NAT DOWN   
ACVR2B-AS1 13.06 1.46 3.16 0.0095731 NAT DOWN   
PRRT3-AS1 28.36 7.04 2.01 0.0095911 NAT DOWN   
LINC00346 1.41 13.14 −3.22 0.0121525 lincRNA UP   
LINC00086 11.86 1.76 2.76 0.0132691 lincRNA DOWN   
RUNX1-IT1 2.57 30.23 −3.56 0.0136106 ncRNA UP   
THAP7-AS1 29.29 8.11 1.85 0.0198907 NAT DOWN   
ZNF503-AS1 11.56 1.93 2.58 0.0240067 NAT DOWN   
RNF157-AS1 10.82 1.91 2.50 0.0245309 NAT DOWN   
AFAP1-AS1 17.34 153.08 −3.14 0.0265179 NAT UP   U [25]
PSMG3-AS1 24.17 6.92 1.80 0.0291786 NAT DOWN   
LINC00578 2.50 13.79 −2.46 0.0404404 lincRNA UP   
lncRNA 2,303.62 721.52 1.67 0.0452843 ncRNA DOWN D  
lncRNA 964.77 471.70 1.03 0.0464071 ncRNA DOWN   
  1. For each differentially expressed lncRNA (FDR < 0.05) the mean normalized expression values (NEV) for each group is provided together with the ratio between normal and PDAC expression in log2 scale (log2 FC). Furthermore, “Class” indicates the lncRNA type, “PED” the expression as provided by the pancreatic cancer expression database (U: Upregulated in PDAC, D: Downregulated in PDAC) and the last column presents information about the expression level of the RNA in other types of cancer.