Molecular Cancer

Table 4 ENCODE data sets used

From: Cancer somatic mutations cluster in a subset of regulatory sites predicted from the ENCODE data

S.No	Cell	ChIP-seq^a(TFs)	DNaseI-seq	RNA-seq (FPKM)	ChIP-seq (H3K27ac)
1	K562	100	√	√	√
2	Gm12878	73	√	√	√
3	Hepg2	57	√	√	√
4	Helas3	54	√	√	√
5	H1hesc	47	√	√	√
6	A549		√	√
7	Ag04450		√	√
8	Bj		√	√
9	Hsmm		√	√
10	Huvec		√	√
11	Mcf7		√	√
12	Nhek		√	√
13	Nhlf		√	√
14	Sknshra		√	√

^aTotal number of transcription factor ChIP-seq datasets considered, note that data sets of CTCF, CTCFL and RNA polymerase II were not used

Back to article page

ISSN: 1476-4598

Contact us

General enquiries: journalsubmissions@springernature.com