Skip to main content

Table 1 Databases of circRNAs

From: Circular RNAs in human cancer

Database

Developers

Functions of database

Most recent version

Address

Reference

circRNABase

Li J et al.

Constructing a network of predicted interactions between miRNAs circular RNA genes and RBP

December 2013

http://starbase.sysu.edu.cn/mirCircRNA.php

[21]

circBase

Glazar P et al.

Providing merged and unified data sets of circRNAs and the evidence supporting their expression

December 2015

http://www.circbase.org/

[22]

deepBase v2.0

Zheng L et al.

Annotating 14867 human circRNAs.

November 2015

http://deepbase.sysu.edu.cn/

[23]

Circ2Traits

Ghosal S et al.

Constructing a network of predicted interactions between miRNAs and protein coding, long non-coding and circular RNA genes. Disease associated SNPs were mapped on circRNA loci, and Argonaute (Ago) interaction sites on circular RNAs were identified

December 2013

http://gyanxet-beta.com/circdb/

[24]

circNet

Liu Y et al.

Providing novel circRNAs, integrated miRNA-target networks, expression profiles of circRNA isoforms, genomic annotations of circRNA isoforms and sequences of circRNA isoforms

December 2015

http://circnet.mbc.nctu.edu.tw/

[25]

CircInteractome

Dudekula DB et al.

Identifying potential circRNAs that can act as RBP sponges; design junction-spanning primers for specific detection of circRNAs of interest; design siRNAs for circRNA silencing, and Identify potential internal ribosomal entry sites (IRES).

December 2015

https://circinteractome.nia.nih.gov/

[26]

CIRCpedia

Yang L et al.

Containing circRNA back-splicing and alternative splicing from 39 human and mouse samples.

January 2015

http://www.picb.ac.cn/rnomics/circpedia/

[27]

TSCD

He C et al.

Depositing the features of tissue specific circRNAs in the human and mouse genomes.

August 2016

http://gb.whu.edu.cn/TSCD/

[28]