MiR-193b promoter methylation accurately detects prostate cancer in urine sediments and miR-34b/c or miR-129-2 promoter methylation define subsets of clinically aggressive tumors

Table 3 MicroRNA/CpG island probe distribution derived from the Infinium HumanMethylation450 BeadChip

miR	TargetID	Probe Sequence	Chr	UCSC Refgene Name	UCSC Refgene Accession	UCSC Refgene Group	UCSC CpG Islands Name	Relation to UCSC CpG Island
miR-34b/c	cg22879515	GTCCTCCCCGGCAGCGCCGCCCGCTGGCCCAGCTACGCGTGTTGTGCGCTGCGAGGCCGG[CG]GGGGTCCCGCTGGGCCCGGGGGTGTCCTCGGGGGCCGCTTGCGCCCAGCCATGGTAGGGC	11	MIR34B; BTG4; MIR34C	NR_029839; NM_017589;NR_029840	TSS200; TSS1500; TSS1500	chr11:111383168–111383892	Island
miR-129-2	cg14416371	GAGACACGAGTCCAGGGGCGCGGAGGGGCGGGCAGCGCGCGGAGTGGTGAGACTGAGCCG[CG]ATGGAACGCGCTGGGGAGACCCAGCCTGTTCGGCTCCAGGGTTCGGAGACATCCTGGGCT	11	MIR129-2	NR_029697	TSS200	chr11:43602545–43603215	Island
miR-152	cg05687686	CAGCTTCGGCATATTTGGCGGAGCCGGGAAGGCCCGGAGCGCAAGAAGGCATCGCAGCCT[CG]CAGCAGATCTGAAAGGGTTGTGGGCGGGGGGCTCATTTTCGCCGGATTTCTTTTCCGTGT	2	MIR1258; ZNF385B	NR_031659;NM_152520	TSS1500; TSS1500	chr2:180725717–180726465	S_Shore
miR-193b	cg09918657	AGTGGCGTTTCTGGTTTCTCTTTGCTTCCAATCCCCACCAAGCGGAGCGTTGGAATGCGC[CG]CTTATGTCCTCTGAGGACACATCCATATTTATAATTTATTTTTAGGAGAAGTTGTGAAAA	16	MIR193B	NR_030177	TSS1500	chr16:14395604–14397075	S_Shore
miR-663a	cg08304190	GCCTCACGAGCCCCTGGTCCCGCCACCGGGGCCCCGAAGCGACCACAGCCACAAACTCAA[CG]CCAGGGCCACATCGCTCGTGATTCTCGTCCATCCTCCGACCCGGTCCCGCTCCGGGAGAC	20	MIR663	NR_030386	TSS200	chr20:26188638–26190348	Island
miR-1258	cg05850656	ACTGCTCCAGAGCCCGAGTCGGAGTGTATCACAGAACCTGGGCCGGGGGGGACAGCGGGC[CG]AGCCTCCTTCTTCCAGCTGATCCCTGGCCGGGCTGGACCTGCGCTATCAGCGCGCCCCCA	17	MIR152; COPZ2	NR_029687;NM_016429	TSS200; Body	chr17:46114573–46115059	Island

ISSN: 1476-4598