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Table 3 Mass spectrometry results of the proteins pulled down by HOTTIP

From: A long non-coding RNA HOTTIP expression is associated with disease progression and predicts outcome in small cell lung cancer patients

Hits

Protein Name

Score

Mass

Matches

Sequences

emPAI

1

UBE2N_HUMAN

71

17,184

4 (2)

4 (2)

0.43

2

4F2_HUMAN

70

68,180

3 (1)

3 (1)

0.05

3

PGRC2_HUMAN

70

23,861

4 (2)

4 (2)

0.3

4

TCAL4_HUMAN

69

24,746

4 (2)

4 (2)

0.29

5

TM109_HUMAN

69

26,194

5 (3)

4 (3)

0.43

6

ACBP_HUMAN

68

10,038

3 (2)

3 (2)

0.82

7

CH60_HUMAN

68

61,187

7 (2)

7 (2)

0.11

8

RA1L2_HUMAN

67

34,375

7 (1)

5 (1)

0.1

9

RL29_HUMAN

67

17,798

3 (1)

3 (1)

0.19

10

PPIA_HUMAN

67

18,229

4 (2)

2 (2)

0.41

11

ZFP91_HUMAN

66

64,261

2 (1)

2 (1)

0.05

12

SC61B_HUMAN

66

10,025

1 (1)

1 (1)

0.35

13

LASP1_HUMAN

66

30,097

3 (2)

3 (2)

0.23

14

T22D1_HUMAN

65

109,649

4 (2)

4 (2)

0.06

15

WBP4_HUMAN

65

42,652

9 (1)

5 (1)

0.08

16

ECE1_HUMAN

65

87,906

5 (2)

5 (2)

0.08

17

ROA2_HUMAN

64

37,464

6 (2)

6 (2)

0.18

18

RS28_HUMAN

64

7893

1 (1)

1 (1)

0.45

19

BL1S2_HUMAN

64

16,008

3 (1)

3 (1)

0.21

20

MAP2_HUMAN

63

199,860

13 (1)

10 (1)

0.02

21

PP1RB_HUMAN

63

14,229

1 (1)

1 (1)

0.24

22

UB2V2_HUMAN

63

16,409

4 (2)

4 (2)

0.45

23

NFU1_HUMAN

63

28,615

3 (2)

2 (2)

0.25

24

TPBG_HUMAN

63

46,573

2 (2)

2 (2)

0.15

25

CR025_HUMAN

62

43,526

4 (1)

4 (1)

0.08

26

4EBP1_HUMAN

61

12,686

2 (2)

2 (2)

0.61

27

AGO2_HUMAN

61

98,400

7 (1)

6 (1)

0.03

28

I2BP2_HUMAN

60

61,728

2 (1)

2 (1)

0.05

29

RABP2_HUMAN

60

15,854

3 (2)

3 (2)

0.47

30

C1QBP_HUMAN

59

31,742

1 (1)

1 (1)

0.1

31

YLPM1_HUMAN

59

220,077

12 (2)

11 (2)

0.03

32

PSB9_HUMAN

58

23,364

2 (1)

2 (1)

0.14

33

BASI_HUMAN

58

42,573

2 (2)

2 (2)

0.16

34

COX5A_HUMAN

58

16,923

2 (1)

2 (1)

0.2

35

MAVS_HUMAN

58

57,063

1 (1)

1 (1)

0.06

36

BET1L_HUMAN

57

12,437

3 (1)

3 (1)

0.28

37

ATIF1_HUMAN

57

12,241

9 (2)

6 (1)

0.28

  1. Abbreviations: Score, protein score; Mass, molecular weight of matched protein; Matches, figures in brackets indicate the number of matched peptides (P < 0.05); Sequences, type of peptide segment sequences which matches the respective peptide (P < 0.05); emPAI, index of protein abundance