Table 1 Microarray analysis of the 20 most aberrantly regulated lncRNAs in two pairs of CRC
Probe name | lncRNA ID | Gene symbol | FC | Regulation | Chromosom | |
|---|---|---|---|---|---|---|
CRC#1 | CRC#2 | |||||
A_33_P3287399 | ENST00000567788 | LOC100190940 | 41.78 | 35.49 | Up | chr12:130518100–130518041 |
A_21_P0001792 | XR_249156 | LOC101927967 | 20.28 | 39.41 | Up | chr2:78245290–78245231 |
A_33_P3248231 | XR_171099 | LOC283028 | 22.19 | 22.93 | Up | chr10:43248938–43248879 |
A_19_P00806771 | ENST00000412500 | LINC00659 | 14.13 | 18.42 | Up | chr20:61405554–61405495 |
A_21_P0002735 | ENST00000424786 | LOC101928114 | 20.75 | 12.99 | Up | chr3:34450773–34450832 |
A_32_P185317 | ENST00000480284 | MNX1-AS1 | 19.72 | 5.71 | Up | chr7:156809059–156809118 |
A_33_P3531373 | ENST00000602761 | LOC340340 | 17.35 | 3.02 | Up | chr7:106423149–106423208 |
A_21_P0005628 | ENST00000500112 | CCAT1 | 16.68 | 4.73 | Up | chr8:128221174–128221115 |
A_33_P3347437 | NR_033830 | FLJ39080 | 14.33 | 3.11 | Up | chr8:75670332–75670391 |
A_21_P0014466 | XR_245037 | LOC101928152 | 5.04 | 9.27 | Down | chr2:87777086–87777027 |
A_32_P189781 | ENST00000560267 | LINC00520 | 5.09 | 54.58 | Down | chr14:56247937–56247878 |
A_21_P0009298 | ENST00000581851 | LINC00675 | 5.11 | 8.11 | Down | chr17:10698291–10698232 |
A_32_P49668 | NR_073404 | LOC441081 | 5.94 | 7.22 | Down | chr5:68932239–68932298 |
A_32_P112592 | ENST00000490006 | LOC339524 | 6.22 | 18.77 | Down | chr1:87634786–87634845 |
A_33_P3232930 | ENST00000420587 | GNG12-AS1 | 6.74 | 11.73 | Down | chr1:68668599–68668658 |
A_21_P0001781 | ENST00000435411 | LOC101927156 | 7.71 | 13.70 | Down | chr2:182263732–182263791 |
A_23_P79572 | NR_026664 | MGC16025 | 9.49 | 21.02 | Down | chr2:240115646–240115587 |
A_33_P3365978 | ENST00000434993 | ST7-AS2 | 13.60 | 20.95 | Down | chr7:116752410–116752351 |
A_19_P00322815 | ENST00000585267 | CDKN2B-AS1 | 18.31 | 16.36 | Down | chr9:22118707–22118766 |