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Table 1 Database about circRNAs

From: The novel roles of circRNAs in human cancer

Database Website Function Reference
Circbase http://www.circbase.org/ CircBase merged and unified data sets of circRNAs and the evidence supporting their expression, and also provided scripts to identify known and novel circRNAs in sequencing data [61]
CIRCpedia v2 http://www.picb.ac.cn/rnomics/circpedia CIRCpedia contained comprehensive circRNA annotation from over 180 RNA-seq datasets across six different species [62]
DeepBase v2.0 http://rna.sysu.edu.cn/deepBase/ DeepBase v2.0 annotated 14,867 human circRNAs [63]
CircRNADb http://202.195.183.4:8000/circrnadb/circRNADb.php CircRNADb provided the detailed information of the circRNA, including genomic information, exon splicing, genome sequence, IRES, ORF and references [64]
Circnet http://circnet.mbc.nctu.edu.tw/ Circnet generated an integrated regulatory network that illustrated the regulation between circRNAs, miRNAs and genes [65]
Starbase v2.0 http://starbase.sysu.edu.cn/ StarBase v2.0 systematically identified the RNA-RNA and protein-RNA interaction networks from 108 CLIP-Seq data sets generated by 37 independent studies [66]
CSCD http://gb.whu.edu.cn/CSCD/ CSCD predicted the microRNA response element sites, RNA binding protein sites and potential open reading frames for each circRNA [67]
CircInteractome http://circinteractome.nia.nih.gov/ CircInteractome searched public circRNA, miRNA, and RBP databases to provide bioinformatic analyses of binding sites on circRNAs and additionally analyzes miRNA and RBP sites on junction and junction-flanking sequences [68]
CirclncRNAnet http://app.cgu.edu.tw/circlnc/ CirclncRNAnet provided a “one-stop” resource for in-depth analyses of ncRNA biology [69]
ExoRBase http://www.exorbase.org/ ExoRBase provided annotation, expression level and possible original tissues about 58,330 circRNAs in human blood exosomes [70]
CircRNADisease http://cgga.org.cn:9091/circRNADisease/ CircRNA Disease provided experimentally supported circRNA and disease associations [71]