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Table 1 Primers and oligos used

From: A novel tumor suppressor protein encoded by circular AKT3 RNA inhibits glioblastoma tumorigenicity by competing with active phosphoinositide-dependent Kinase-1

RT-PCR primers

 

Forward primer(5‘to 3’)

Reverse primer(5‘to 3’)

Amplified product(bps)

 QPCR Circ-AKT3(Divergent primers)

AAGTGGCACACACTCTAACTG

GTTTTCATTAACTGGCATTCTCG

150

 QPCR Linear-AKT3(Convergent primers)

GGAGTCATCATGAGCGATGT

TAACTGGCATTTTGCCACTG

192

 QPCR-AKT1

CATGAGCGACGTGGCTATTG

GCCTCACGTTGGTCCACATC

150

 QPCR-AKT2

AAGAAGGCTGGCTCCACAAG

GCATTCTGCTACGGAGAAGT

158

 QPCR-beta-actin

ACAGAGCCTCGCCTTTGCCGAT

CTTGCACATGCCGGAGCCGTT

109

Plasmid construction primers

 OV-circ-AKT3

TTCGAATTCAGTGCTGAGATTACAGGCGTGAG

TTCGAATTCAGTGCTGAGATTACAGGCGTGAG

686

 OV-AKT3-174aa-flag

TTCGAATTCATGAAAACAGAACGACCAAAGC

AATGGATCCTTACTTGTCATCGTCATCCTT

609

 Rluc-PCR

AGGCTAGCGCCACCATGGCTTCCAAGGTGT

TTATTACTGCTCGTTCTTCAGCAC

953

 luc-PCR

GCCACCATGGCCGATGCTAA

CGCTCGAGTTACACGGCGATCTTGCCGCCTT

1667

 Circ-AKT3-IRES-WT

ATGGTACCAATGGACAGAAGCTATCCAGGCTGTA

CTGGAATTCCCTTCTCTCGAACCAAAATAACT

233

 Circ-AKT3-IRES-Del-1

ATGGTACCAATGGACAGAAGCTATCCAGGCTGTA

CTGGAATTCATCTCTTCCTCTCCTATATTATCAA

126

 Circ-AKT3-IRES-Del-2

ATGGTACCTGGATGCCTCTACAACCCATCA

CTGGAATTCCCTTCTCTCGAACCAAAATAAC

125

Probes

 Circ-AKT3-FISH-probe

Cy3-TTTCATTAACTGGCATTCTCGCCCCCATTAAC

  

 Northern-Circ-AKT3-probe

TTTCATTAACTGGCATTCTCGCCCCCATTAAC-DIG

  

 Northern-U6-probe

TCTTCTCTGTATCGTTCCAATTTTAGTATATGTGC-DIG

  

siRNA sequences

 Name

sense(5'-3')

antisense(5'-3')

 

 Circ-AKT3-siRNA-1

GGGGCGAGAAUGCCAGUUAAUtt

AUUAACUGGCAUUCUCGCCCCtt

 

 Circ-AKT3-siRNA-2

GGCGAGAAUGCCAGUUAAUGAtt

UCAUUAACUGGCAUUCUCGCCtt

 

 Circ-AKT3-siRNA-NC

GCGCCCUGAUUGCCUGAAAUAtt

UAUUUCAGGCAAUCAGGGCGCtt

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