Table 3 Database for circRNA research

circBase

http://www.circbase.org/

A circRNA database contains circRNA information from multiple species.

[38]

circRNABase

http://starbase.sysu.edu.cn/mirCircRNA.php

Views the predicted miRNA-circRNA interactions by scanning circRNA sequences overlapping with CLIP-Seq peak.

[134]

Circ2Traits

http://gyanxet-beta.com/circdb/

A database of circular RNAs that may be associated with disease and traits. Predicts the interaction between miRNAs and genes, lncRNAs, and circRNAs.

[135]

CircInteractome

http://circinteractome.nia.nih.gov/

Predicts binding sites of proteins to circRNAs. Predicts potential binding sites for miRNAs-circRNAs interaction.

[136]

CircNet

http://circnet.mbc.nctu.edu.tw/

New circRNA predictions and genome annotations performed using 464 RNA sequencing data.

[137]

Deepbase

http://deepbase.sysu.edu.cn/

Collects 18,000 small RNAs, 36,0000 lncRNAs and 100,000 circRNA genes (human, murine, fruit flies, nematodes, etc.).

[138]

circRNADb

http://reprod.njmu.edu.cn/circrnadb

The first database that summarises circRNAs that encode proteins. A total of 32,914 human exon circRNAs were collected.

[139]

CIRCpedia

http://www.picb.ac.cn/rnomics/circpedia/

Constructs by using CIRCexplorer2 for bioinformatic predictive analysis of circRNAs in tissues and cell lines.

[140]

CSCD

http://gb.whu.edu.cn/CSCD

Collects circRNAs from tumour cell lines and normal cells from ENCODE. Predicts cellular localisation of circRNAs, MRE, RBP and variable splicing of related genes.

[141]

circlncRNAnet

http://app.cgu.edu.tw/circlnc/

Allows for a personalised analysis of lncRNAs, including lncRNA expression maps, gene function enrichment analysis maps, RBP-RNA network maps and miRNA network maps.

[142]

circRNA disease

http://cgga.org.cn:9091/circRNADisease/

CircRNA records include circRNA basic information, related disease information, circBase links and PubMed links.

[143]