Skip to main content

Table 3 Database for circRNA research

From: Biogenesis, functions and clinical significance of circRNAs in gastric cancer

Database URL Annotation Ref.
circBase http://www.circbase.org/ A circRNA database contains circRNA information from multiple species. [38]
circRNABase http://starbase.sysu.edu.cn/mirCircRNA.php Views the predicted miRNA-circRNA interactions by scanning circRNA sequences overlapping with CLIP-Seq peak. [134]
Circ2Traits http://gyanxet-beta.com/circdb/ A database of circular RNAs that may be associated with disease and traits. Predicts the interaction between miRNAs and genes, lncRNAs, and circRNAs. [135]
CircInteractome http://circinteractome.nia.nih.gov/ Predicts binding sites of proteins to circRNAs. Predicts potential binding sites for miRNAs-circRNAs interaction. [136]
CircNet http://circnet.mbc.nctu.edu.tw/ New circRNA predictions and genome annotations performed using 464 RNA sequencing data. [137]
Deepbase http://deepbase.sysu.edu.cn/ Collects 18,000 small RNAs, 36,0000 lncRNAs and 100,000 circRNA genes (human, murine, fruit flies, nematodes, etc.). [138]
circRNADb http://reprod.njmu.edu.cn/circrnadb The first database that summarises circRNAs that encode proteins. A total of 32,914 human exon circRNAs were collected. [139]
CIRCpedia http://www.picb.ac.cn/rnomics/circpedia/ Constructs by using CIRCexplorer2 for bioinformatic predictive analysis of circRNAs in tissues and cell lines. [140]
CSCD http://gb.whu.edu.cn/CSCD Collects circRNAs from tumour cell lines and normal cells from ENCODE. Predicts cellular localisation of circRNAs, MRE, RBP and variable splicing of related genes. [141]
circlncRNAnet http://app.cgu.edu.tw/circlnc/ Allows for a personalised analysis of lncRNAs, including lncRNA expression maps, gene function enrichment analysis maps, RBP-RNA network maps and miRNA network maps. [142]
circRNA disease http://cgga.org.cn:9091/circRNADisease/ CircRNA records include circRNA basic information, related disease information, circBase links and PubMed links. [143]