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Table 2 List of ncRNA-target and the type of interaction present in the network

From: The network of non-coding RNAs and their molecular targets in breast cancer

ncRNA

Direct target

Direct effect*

PMID

BCAR4

HK2

pos

28963395

BCAR4

PFKFB3

pos

28963395

BCAR4

PNUTS

pos

25416949

BCAR4

SNIP1

pos

25416949

Eleanor

ESR1

pos

25923108

Eleanor

ESR1

pos

31439835

Eleanor

FOXO3

pos

31439835

H19

DNMT3B

pos

31340867

H19

HIF1A

pos

29106390

H19

let-7

neg

28102845

H19

let-7

neg

29106390

H19

LIN28

pos

28102845

H19

MIR675

neg

30803129

H19

PDK1

pos

29106390

H19

SAHH

neg

31340867

H19

BECN1

pos

31340867

HOTAIR

BRD4

pos

28846832

HOTAIR

EZH2

pos

30764859

HOTAIR

HBXIP

pos

26719542

HOTAIR

KDM1A

pos

26719542

HOTAIR

NLK

neg

30764859

LINC00511

EZH2

pos

31395854

LINC00511

MIR185

neg

30482236

LINC00511

CDKN1B

neg

31395854

LINC00511

E2F1

pos

30482236

LINK-A

AKT1

pos

28218907

LINK-A

BRK

pos

26751287

LINK-A

LRRK2

pos

26751287

LINK-A

HIF1A

pos

26751287

LINK-A

PIP3

pos

28218907

MALAT1

ID4

pos

28652379

MALAT1

MIR216

neg

30982780

MALAT1

p53

pos

28652379

MALAT1

PNPO

pos

30982780

MALAT1

SRSF1

pos

28652379

MALAT1

TEAD1

neg

30349115

MALAT1

VEGFA

pos

28652379

mir-100

BMPR2

neg

25217527

mir-200b

ARHGAP18

neg

28619708

mir-200b

ZEB1

neg

25972084

mir-200b

ZEB2

neg

25972084

mir-200b

Sec23a

neg

25401471

mir-200b

ZEB2

neg

25401471

mir-200c

OBR

neg

25840984

mir-200c

ZEB1

neg

27402080

mir-200c

Sec23a

neg

25401471

mir-200c

ZEB2

neg

25401471

mir-200c

PDGFRB

neg

27402080

mir-203a

Axl

neg

26292363

mir-203a

ONECUT2

neg

31118200

mir-203a

RUNX2

neg

25634212

mir-203a

SLUG

neg

26292363

mir-203a

TP63

neg

26292363

mir-205

Ubc13

neg

25476932

mir-205

ZEB1

neg

25476932

mir-205

ZEB1

neg

26292362

mir-205

ZEB2

neg

26292362

MIR2052HG

EGR1

pos

30944027

MIR2052HG

ESR1

pos

27758888

MIR2052HG

PRKCB

neg

30944027

MIR2052HG

AKT1

pos

27758888

MIR2052HG

FOXO3

neg

27758888

MIR2052HG

ESR1

pos

30944027

MIR2052HG

LMTK3

pos

30944027

mir-23b

AMOTL1

neg

26178901

mir-23b

PLAU

neg

26178901

mir-23b

SLC6A14

neg

31269432

mir-25

BTG2

neg

29310680

mir-25

NCOA3

neg

28920955

mir-25

AKT1

pos

29310680

mir-25

MAPK

pos

29310680

mir-25

CGAS

neg

28920955

mir-27b

ENPP1

neg

26065921

mir-27b

PDHX

neg

30012170

mir-27b

ABCG2

neg

26065921

mir-29b

CDC42

neg

25622979

mir-29b

Hsp47

neg

25744716

mir-100

SMARCA5

neg

25217527

mir-100

SMARCD1

neg

25217527

mir-100

mTOR

neg

28741069

mir-100

VEGFA

neg

28741069

mir-10b

BCL2L11

neg

26359455

mir-10b

DYRK1A

neg

27569213

mir-10b

HOXD10

neg

25428807

mir-10b

HOXD10

neg

26359455

mir-10b

HOXD10

neg

27569213

mir-10b

KLF4

neg

25428807

mir-10b

PTEN

neg

27113763

mir-10b

PTEN

neg

27569213

mir-10b

Tbx5

neg

27569213

mir-10b

AKT1

pos

27113763

mir-125a

HDAC5

neg

25531695

mir-125a

HER2

neg

30068375

mir-125a

HER3

neg

30068375

mir-125b

HER2

neg

25388283

mir-125b

HER2

neg

30068375

mir-125b

HER3

neg

30068375

mir-146a

FN1

neg

30622118

mir-146a

IRAK1

neg

25712342

mir-146a

TRAF6

neg

25712342

mir-146a

NF-KB1

neg

25712342

mir-181a

MMP-14

neg

25977338

mir-181a

TUSC3

neg

28288641

mir-182

Palladin

neg

27641360

mir-182

SMAD7

neg

27996004

mir-196a

HOXB7

neg

26180042

mir-196a

SPRED1

neg

29685157

mir-196a

HER2

neg

26180042

mir-200a

Sec23a

neg

25401471

mir-200a

ZEB1

neg

25972084

mir-200a

ZEB2

neg

25401471

mir-200a

ZEB2

neg

25972084

mir-200b

ARHGAP18

neg

28619708

mir-200b

ZEB1

neg

25972084

mir-200b

ZEB2

neg

25972084

mir-29b

PIK3R1

neg

25622979

mir-29c

Hsp47

neg

25744716

mir-29c

TET2

neg

29109788

mir-30a

CDH11

neg

30042152

mir-30a

ITGA5

neg

30042152

mir-30a

ITGB3

neg

30042152

mir-30a

ZEB2

neg

29666469

mir-30e

CDH11

neg

30042152

mir-30e

EIF5A2

neg

29560860

mir-30e

ITGA5

neg

30042152

mir-30e

ITGB3

neg

30042152

mir-30e

SCA1

neg

29560860

mir-30e

TUSC3

neg

28288641

mir-34a

AGO2

neg

29941603

mir-34a

SRC

neg

26676753

mir-34a

C22ORF28

neg

29187905

mir-34a

eEF2K

neg

29748184

mir-34a

FOXM1

neg

29748184

mir-34a

GFRA3

neg

28356515

mir-34a

MCT-1

neg

30885232

mir-34a

NOTCH1

neg

25368020

mir-34a

tRNAiMET

neg

29941603

mir-9

ONECUT2

neg

31118200

mir-9

STARD13

neg

27402080

mir-9

PDGFRB

pos

27402080

mir-96

FOXO1

neg

27170187

mir-96

FOXO1

neg

29792692

mir-96

Palladin

neg

27641360

NEAT1

FOXN3

pos

28805661

NEAT1

GATA3

neg

28805661

NEAT1

JAM1

neg

25417700

NEAT1

MIR204

neg

30803129

NEAT1

SIN3A

pos

28805661

UCA1

MIR122

neg

29669595

UCA1

SLUG

pos

29774079

  1. *pos positive interaction, activation, neg negative interaction, repression