The network of non-coding RNAs and their molecular targets in breast cancer

Crudele, Francesca; Bianchi, Nicoletta; Reali, Eva; Galasso, Marco; Agnoletto, Chiara; Volinia, Stefano

doi:10.1186/s12943-020-01181-x

Molecular Cancer

Table 3 List of non-codingRNAs, their targets and the type of interactions, cited by only one scientific article, and therefore excluded from the network illustrated in Fig. 1 and further described and discussed in the main text of the review

From: The network of non-coding RNAs and their molecular targets in breast cancer

Non-coding RNA	Target	Type of interaction*	PMID	Reference
AC0269041	SNAI2	pos	29774079	[1]
AGAP2-AS1	MyD88	pos	30157918	[2]
Ai-EGOT	ITPR1, HNRNPH1	pos	30999914	[3]
AK023948	AKT1	pos	28176758	[4]
ANCR	EZH2	neg	27716745	[5]
ARNILA	miR-204	neg	29844570	[6]
ASncmtRNA-1	CCNB1, CCND1, CDK1, CDK4, BIRC5	pos	31142736	[7]
BCYRN1	BCL2L1	pos	27277684	[8]
BORG	RPAIN	pos	30467380	[9]
CASIMO1	SQLE	pos	29765154	[10]
CCAT1	miR-148a/152, miR-204, ANXA2, miR-211	neg	31695775	[11]
circ_0025202	miR-182-5p, FOXO3	neg	31153828	[12]
circAGFG	miR-195-5p	neg	30621700	[13]
circANKS1B	miR-148a, miR-152	neg	30454010	[14]
circEPSTI1	miR-4753, miR-6809	neg	30083277	[15]
circFoxo3	FOXO3	pos	27886165	[16]
circGFRA1	miR-34a	pos/neg	29037220	[17]
circIRAK3	miR-3607	neg	29803789	[18]
circKIF4A	miR-375	neg	30744636	[19]
CYTOR	mTOR, GOLPH3, KIF14, PRKCA, SMYD3	pos	27617288	[20]
DANCR	RXRA, PIK3CA	pos	30518934	[21]
DSCAM-AS1	HNRNPL	pos	27666543	[22]
EFNA3 (NC1 and NC2)	EFNA3	pos	25023702	[23]
ELAV1	CD133	neg	27197265	[24]
EPB41L4A-AS2	RARRES1	pos	30764831	[25]
EPIC1	CDC45, CDC20, CCNA2, CDKN1A	pos	29622465	[26]
Esrp2-as	ESRP2	pos	28759043	[27]
FGF13-AS1	MYCBP, IGF2BP	neg	30771425	[28]
FN1	miR-200c	neg	30967542	[29]
GAS5	miR-222	neg	29969658	[30]
IRAIN	IGF1R	neg	30195750	[31]
LncKLHDC7B	KLHDC7B	pos	30648789	[32]
let-7a	BCL2L1	neg	26915294	[33]
LINC00673	miR-515-5p	neg	31623640	[34]
LINC00968	WNT2	neg	30791958	[35]
LINC01125	LXR-623	pos	30867411	[36]
LINC01133	KLF4	pos	31283068	[37]
LINC01355	CCDN1, FOXO3	neg	31243265	[38]
LINC01638	MYCBP	pos	30002443	[39]
LINC02582	USP7	neg	31601781	[40]
LINCIN	NF90 (a major spliced form of interleukin enhancer binding factor 3, ILF3) CDKN1A	pos, neg	28558830	[41]
LINCK	RSL1D1, ZEB1, ZO-1, CDH1/E-cadherin, CDH2/N-cadherin, VIM	pos, pos, neg, neg, pos, pos	30795783	[42]
LINCRNA-APOC1P1–3	TUBA1A	pos	27228351	[43]
LINC-RoR	DUSP7	neg	29041978	[44]
LINC-ZNF469–3	miR-574-5p	pos	29755127	[45]
LINP1	IGFBP3	pos	30725116	[46]
LncATB	miR-200, TWIST1	neg	30518916	[47]
Lnc-BM	JAK2/STAT	pos	29130936	[48]
lncRNA152, lncRNA67	E2F4	pos	26236012	[49]
lncRNA-Hh	GAS1	pos	26418365	[50]
LOC284454	COL2A1, COL4A1 COL6A1, ITGA2	neg	29227193	[51]
MAYA	MST1, YAP1	pos	28114269	[52]
MBNL1	DBNL, TACC	neg	26883358	[53]
MEG3	TGFB, TGFBR1, SMAD2	neg	26205790	[54]
MIR100HG	CDKN1B	pos	30042378	[55]
miR-101	POMP	neg	26145175	[56]
miR-103, miR-107	NKILA	neg	25759022	[57]
miR-105	MXI1	neg	29588351	[58]
miR-106b	BRMS1L	neg	25406648	[59]
miR-1204	VDR	neg	29555976	[60]
miR-122	PKM	neg	25621950	[61]
miR-124	IL-11	neg	29343249	[62]
miR-1254	CCAR1	neg	27002217	[63]
miR-1285, miR-136	HERC4	neg	30710319	[64]
miR-130a	PTEN	neg	28935812	[65]
miR-132, miR-212	SOX4	neg	26377202	[66]
miR-135	RUNX2	neg	25634212	[67]
miR-135a1	ESR1, ESRRA, NCOA1	neg	29945962	[68]
miR-138	EZH2	neg	25339353	[69]
miR-139	MAT2A, POLQ, TOP1, TOP2A, XRCC5	neg	29180477	[70]
miR-141	TCF12	neg	26068592	[71]
miR-142	APC	neg	25406066	[72]
miR-144	TET2, EIF5A2, ATXN2	neg	29109788	[73]
miR-148a	DKK1	neg	29721077	[74]
miR-148b	ITGA5, ALCAM	neg	27328731	[75]
miR-15	BCL2	neg	26915294	[33]
miR-153	KLF5	neg	26941846	[76]
miR-155	miR-143	pos	26795347	[77]
miR-159	TCF7	neg	26794868	[78]
miR-181c	PDPK1	neg	25828099	[79]
miR-185	E2F1	neg	30482236	[80]
miR-18a	SREBF1	neg	29988076	[81]
miR-190	SMAD2	neg	29510731	[82]
miR-195	ONECUT2	neg	31118200	[83]
miR-199a	LCOR	neg	28530657	[84]
miR-200c/141	HIPK1	neg	30613263	[85]
miR-204	PIK3CB	neg	30737233	[86]
miR-206	TWF1, MAP 3 K9, SPATA6, IL-11	neg, pos, pos, pos	27435395	[87]
miR-20a	MAPK1	neg	29125598	[88]
miR-21	DDX5, PTEN	pos	30413718	[89]
MIR210HG	miR-1226-3p	neg	31399552	[90]
miR-214	miR-148b	neg	27328731	[75]
miR-216b-5p	PNPO	neg	30982780	[91]
miR-218	ZFX	neg	31310241	[92]
miR-221	Beclin1	neg	27940575	[93]
miR-24	ING5	neg	28490335	[94]
miR-31	GNA13	neg	25889182	[95]
miR-320b	NRP1, ETS2	neg	26178901	[96]
miR-329, miR-362	BCAR1	neg	26337669	[97]
miR-33a	ADAM9, ROS1	neg	26507842	[98]
miR-345	KISS1	neg	28981380	[99]
miR-34c	EIF5A2, SCA2	neg	29560860	[100]
miR-3609, miR-5096	CDK1	neg	31142736	[7]
miR-375	TNS3, PXN, CCL2	neg	30850595	[101]
miR-424 (322)/503	BCL2, IGF1R	neg	28404630	[102]
miR-4306	SIX1, CDC42, VEGFA	neg	30867840	[103]
miR-4485-3p	CCNB1, CCND1	neg	31142736	[7]
miR-454-3p	RPRD1A, AXIN2, DKK3, SFRP1	neg	30809286	[104]
miR-4728	ESR1	neg	29476008	[105]
miR-4766-5p	SIRT1	neg	29752439	[106]
miR-484	CDA	neg	25643696	[107]
miR-515	NRAS, MARK4, PIK3CB	neg	26882547	[108]
miR-548a	SIX1	neg	29455928	[109]
miR-548j	Tensin1	neg	26949125	[110]
miR-5582-3p	LUCAT1, TCF7	neg	31300015	[111]
miR-600	SCD1	neg	28249169	[112]
miR-892b	NF-kB, TRAF2, TAB3, TAK1	neg	26747895	[113]
miR-93	NCOA3	neg	28920955	[114]
miR-940	ARHGAP1, FAM134A	neg	29440427	[115]
miR-99a	Her2	neg	25388283	[116]
MPPED2-AS1	DNMT1, MPPED2	neg	31181813	[117]
NAMPT-AS	POU2F2	pos	30940661	[118]
NBR2	AMPK	pos	26999735	[119]
NDRG1-OT1	NDRG1	neg	30497328	[120]
NKILA	Ik-B	neg	25759022	[57]
NONHSAT101069	miR-129-5p	neg	31444414	[121]
NORAD	S100P	neg	30967631	[122]
PDCD4-AS1	PDCD4	pos	30496290	[123]
piR-FTH1	Fth1	neg	30102404	[124]
PIWI-36712	SEPW1P	neg	30636640	[125]
PIWIL3	miR-21, miR-45	neg	28094937	[126]
PNUTS	miR-205, ZEB1, ZEB2	neg, pos, pos	28825698	[127]
PRLB	SIRT1	pos	29752439	[106]
PTENP1	miR-20a, PTEN	neg, pos	31196157	[128]
PTV1	BAP-1, CTNNB1	pos	29760406	[129]
PYCARD-AS1	DNMT1, G9	pos	31086376	[130]
RAINs	RUNX2	pos	28981843	[131]
RP1	p27	neg	31073122	[132]
SNHG5	miR-154-5p	neg	31255976	[133]
SPRY4-IT1	ZNF703	pos	25742952	[134]
ST8SIA6-AS1	PLK1, AURORA	pos	31286138	[135]
T3p	RISC, NUPR1, PANX2	neg, pos, pos	30397354	[136]
TINCR	HER-2, miR-125b, Snail1	Pos, neg, pos	30621694	[137]
TROJAN	ZMYND8, ZNF592	neg	30854423	[138]
WDR7–7	GPR30	pos	29096683	[139]
XIST	c-Met, miR-503	neg, pos	30028120	[140]
YIYA	CDK6, PFKFB3	pos	29967256	[141]

*pos positive interaction, activation, neg negative interaction, repression

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