Overexpression of CIP2A is an independent prognostic indicator in nasopharyngeal carcinoma and its depletion suppresses cell proliferation and tumor growth

Background Cancerous inhibitor of protein phosphatase 2A (CIP2A) is an oncoprotein that acts as a prognostic marker for several human malignancies. In this study, we investigated the clinical significance of CIP2A and its function in nasopharyngeal carcinoma (NPC). Methods Quantitative RT-PCR, western blot, and immunohistochemistry analyses were used to quantify CIP2A expression in NPC cell lines and clinical samples. Kaplan-Meier curves were used to estimate the association between CIP2A expression and patient survival. The functional role of CIP2A in NPC cell lines was evaluated by small interfering RNA-mediated depletion of the protein followed by analyses of cell proliferation and xenograft growth. Results CIP2A levels were upregulated in NPC cell lines and clinical samples at both the mRNA and protein levels (P < 0.01). Patients with high CIP2A expression had poorer overall survival (HR, 1.98; 95% CI, 1.16-3.34; P = 0.01) and poorer disease-free survival (HR, 1.68; 95% CI, 1.07-2.62; P = 0.02) rates than patients with low CIP2A expression. In addition, CIP2A expression status was an independent prognostic indicator for NPC patients. The depletion of CIP2A expression inhibited c-Myc protein expression in NPC cell lines, suppressed cell viability, colony formation, and anchorage-independent growth in vitro, and inhibited xenograft tumor growth in vivo. Conclusions Our data demonstrate that high CIP2A expression in patients was associated with poor survival in NPC, and depletion of CIP2A expression inhibited NPC cell proliferation and tumor growth. Thus, these results warrant further investigation of CIP2A as a novel therapeutic target for the treatment of NPC.


Introduction
Nasopharyngeal carcinoma (NPC) is an epithelial malignancy of the nasopharynx, and global statistics obtained for different world regions reveal that its distribution is extremely unbalanced, with the highest incidence rates occurring in Southern China [1,2]. According to data from the International Agency for Research on Cancer, there were an estimated 84,000 cases of NPC and 51,600 NPC-related deaths in 2008 [3]. Although the increased prevalence of intensity-modulated radiation therapy with concurrent chemoradiation therapy has improved the local and regional control of NPC for patients with locoregionally advanced disease, their prognosis is still poor due to recurrence and/or distant metastasis [4,5]. Thus, a better understanding of the underlying molecular mechanisms involved in NPC pathogenesis and progression is essential for the development of novel therapeutic strategies to treat patients with NPC.
Cancerous inhibitor of protein phosphatase 2A (CIP2A), also known as KIAA1524 and p90, is a recently identified human oncoprotein that inhibits the degradation of c-MYC by inhibiting the protein phosphatase 2A (PP2A)-mediated dephosphorylation of MYC at serine 62 [6][7][8]. In addition, CIP2A and MYC appear to be regulated by a positive feedback loop that promotes the expression of both proteins [7]. Originally identified as an oncoprotein, CIP2A contributes to the immortalization and malignant transformation of human cells [6], and the depletion of CIP2A decreased cell viability and anchorage-independent growth in a variety of human malignancies [6][7][8][9][10][11]. More importantly, CIP2A was recently found to be overexpressed at a high frequency in most types of cancer and may serve as a prognostic predictor [12][13][14][15][16][17][18][19][20]. However, the clinical significance and biological function of CIP2A in NPC has not been thoroughly investigated to date.
In the present study, we examined both the mRNA and protein expression levels of CIP2A in NPC cell lines and tissue samples and further analyzed the clinical significance of CIP2A in a cohort of NPC patients. In addition, we explored the potential role of CIP2A in NPC cell proliferation and tumor growth, which could help to better understand the pathology of NPC and may further provide a novel therapeutic target for the treatment of NPC patients.

Expression of CIP2A in NPC cells and tissues
Quantitative RT-PCR and western blot analyses were used to determine the levels of CIP2A mRNA and protein in NPC cell lines and the normal nasopharyngeal epithelial cell line NP69. CIP2A was significantly upregulated in all six NPC cell lines when compared to the NP69 cells at both the mRNA and protein levels ( Figure 1A-B). Furthermore, we detected CIP2A mRNA expression in 18 freshly frozen NPC tissues and 14 normal nasopharyngeal epithelial tissues and found that CIP2A mRNA levels were considerably higher in NPC tissues ( Figure 1C). Similarly, CIP2A protein was also increased in NPC tissues when compared to normal nasopharyngeal epithelial tissues ( Figure 1D). These results suggest that CIP2A is upregulated in NPC.

CIP2A expression and the clinical variables of NPC patients
We then analyzed CIP2A protein expression levels in a set of 280 paraffin-embedded NPC tissue samples using immunohistochemistry. Representative staining of CIP2A in NPC tissue is shown in Figure 2A-H, and positive staining of CIP2A was mainly observed in the cytoplasm. The presence of CIP2A protein was detected in 254 of the 280 (90.3%) cancer samples analyzed, and CIP2A protein expression was highly expressed in 184 of the 280 (65.7%) NPC patients examined. Furthermore, patients with high CIP2A expression exhibited a significant association with T stage (P = 0.04), TNM stage (P < 0.01), distant metastasis (P < 0.01), and patient death (P = 0.01). There were no significant associations between CIP2A expression and patient age, sex, WHO type, VCA-IgA, EA-IgA, N stage, or locoregional failure (Table 1).

CIP2A expression and survival of NPC patients
Kaplan-Meier analysis and the log-rank test were used to calculate the effects of CIP2A on survival, and the results indicated that patients with high CIP2A expression were significantly associated with poorer overall and disease-free survival rates than patients with low CIP2A expression (all P < 0.01, Figure 2I-J). The cumulative 5-year survival rate was 86.5% (95% CI, 79.7-93.3) in the low-CIP2A-expression group, whereas it was only 74.5% (95% CI, 68.2-80.8) in the high-CIP2A-expression group. CIP2A expression, TNM stage, sex, age, WHO type, and EBV seromarkers were analyzed using univariate and multivariate Cox regression analyses. Univariate analyses indicated that patients with high CIP2A expression and advanced disease stages exhibited worse outcomes than those with low CIP2A expression ( Table 2). Multivariate analyses revealed that CIP2A expression and TNM stage were independent prognostic indicators in NPC patients (all P < 0.05, Table 2).
Effects of CIP2A depletion on MYC expression and cell proliferation CIP2A protein expression was remarkably inhibited in CNE-2 and SUNE-1 cells treated with siRNA specifically directed against CIP2A when compared to those treated with scrambled control siRNA ( Figure 3A-B). More importantly, depletion of CIP2A by siRNA suppressed the MYC protein expression in both CNE-2 and SUNE-1 cells ( Figure 3A-B). We also studied the effects of CIP2A depletion on cell viability and proliferation ability using MTT assays and colony formation assays. CNE-2 and SUNE-1 cells transfected with siCIP2A displayed significant growth inhibition compared to those transfected with scrambled control siRNA (P < 0.05, Figure 3C). Moreover, cells transfected with siCIP2A exhibited fewer and smaller colonies compared to the controls (P < 0.05, Figure 3D).

Effects of CIP2A depletion on tumor growth
The ability of cells to grow and form colonies on soft agar is a hallmark characteristic of malignantly transformed cells. To study the effects of CIP2A on the malignant growth of NPC cells, we transfected siCIP2A or scrambled control siRNA into CNE-2 and SUNE-1 cells and found that CIP2A depletion significantly suppressed the anchorage-independent growth of both CNE-2 and SUNE-1 cells (all P < 0.05, Figure 3E). To further explore whether CIP2A was required for NPC tumor growth in vivo, we conducted xenograft tumor model assays by subcutaneously injecting SUNE-1 cells stably expressing shCIP2A or scrambled control siRNA into the dorsal flank of several mice. CIP2A depletion resulted in a significant reduction in tumor growth (P < 0.01, Figure 4A-B). The average tumor weight was also significantly decreased in the CIP2A depletion group compared to the scrambled control siRNA-treated group (0.31 ± 0.11 g vs. 0.54 ± 0.24 g; P < 0.01, Figure 4C-D).

Discussion
In this study, CIP2A was upregulated in both NPC cell lines and clinical samples, and those NPC patients with high CIP2A expression exhibited the poorest survival rates. Furthermore, silencing CIP2A expression influenced MYC protein expression and further suppressed NPC cell proliferation and tumor growth. Our results demonstrate that the overexpression of CIP2A plays important roles in the development and progression of NPC.
Reversible protein phosphorylation is one of the most important biological mechanisms for signal transduction, which is tightly regulated by protein kinases and phosphatases to maintain the balance of the protein's phosphorylation status and control its biological functions. However, there is considerable evidence indicating that the perturbation of this balance, including the activation of protein kinases and inhibition of phosphatases, contributes to the origin and pathogenesis of several human diseases, including cancer [21]. Protein phosphatase 2A (PP2A) is one important type of serine/threonine phosphatase; PP2A is inhibited in human cancers and functions as a tumor suppressor. Furthermore, the inhibition of PP2A activity has been found to result in the immortalization and malignant transformation of human cells [22,23]. Interestingly, CIP2A has recently been identified as an endogenous PP2A inhibitor in human cancer cells using the tandem affinity purification method. In addition, CIP2A inhibition has been found to enhance the catalytic phosphatase activity of the PP2A complex in several types of human malignancies [6,24]. Furthermore, CIP2A also exhibits the ability to transform human immortalized cells [6]; these results expand the general understanding of the mechanisms that are critical for cancer development and progression.
CIP2A was previously demonstrated to be a human oncoprotein due to its ability to transform human immortalized cells. Recently, CIP2A was found to be overexpressed at high frequencies in several types of human cancers [6][7][8][9][10][11]. More importantly, several studies reported that CIP2A could serve as a prognostic indicator for various solid and hematological tumors, including non-small cell lung cancer [12], colon cancer [13], breast cancer [14], ovarian cancer [15], renal cancer [16], tongue cancer [17], esophageal adenocarcinoma [18], bladder cancer [19], and chronic myeloid leukemia [20]. In the present study, CIP2A was significantly overexpressed in NPC cell lines and clinical specimens at both the mRNA and protein levels. Strikingly, NPC patients with high CIP2A protein expression had poorer overall and disease-free survival rates than those with low CIP2A protein expression. Multivariate Cox regression analysis demonstrated that low CIP2A protein expression was an independent prognostic indicator in patients with NPC. These results suggest that CIP2A expression status can serve as a valuable prognostic biomarker to stratify NPC patients into different risk groups and further guide individual therapy choices for patients with NPC. In addition to its biological significance in the promotion of malignant transformation of human cells, CIP2A also plays important roles in carcinogenesis and the progression of human cancers. Several recent studies have reported that silencing CIP2A decreases cell viability and suppresses anchorage-independent growth in several types of human cancer cells [6][7][8][9][10][11]. It also promotes progenitor cell self-renewal and protects cancer cells from therapy-induced apoptosis or the induction of senescence [25,26]. A recent study demonstrated that CIP2A can regulate the cell cycle by targeting PLK1 [27]. More importantly, recent studies have also demonstrated that the depletion of CIP2A via siRNAs inhibits xenograft tumor growth [6,9]. In our present study, we also depleted CIP2A expression via siRNA to better understand the function of CIP2A in NPC. Inhibition of CIP2A expression significantly inhibited NPC cell viability and proliferation in vitro. Furthermore, silencing CIP2A suppressed xenograft tumor growth in vivo. Taken together, these results demonstrate that the dysregulation of CIP2A may contribute to the development and progression of NPC.
In addition, the depletion of CIP2A expression via siRNA suppressed MYC protein expression in NPC cell lines. MYC is one of the most-studied oncogenes, and it is involved in several malignant cellular processes. CIP2A can inhibit the degradation of MYC and therefore enhance its oncogenic activities by inhibiting the PP2A-mediated dephosphorylation of MYC at serine 62 [6][7][8]. CIP2A and MYC are regulated by a positive feedback loop that promotes the expression of both proteins [7]. Furthermore, the mechanisms of CIP2A activation and overexpression in cancer cells has been investigated by several other studies in which E2F1, ETS1, and ATF2 were found to directly bind to the CIP2A promoter and further stimulate CIP2A transcription [28][29][30]. Based on the functions and mechanisms of CIP2A activation in human cancers, the therapeutic targeting of CIP2A could facilitate a novel strategy for cancer therapy, including the use of CIP2A small RNA interference technology or the development of small molecules that target the CIP2A-PP2A interaction [6,31]. In addition, another alternative strategy to inhibit CIP2A activity is to target the signaling mechanisms that drive high CIP2A expression, such as the use of MYC [7], EGFR [29], and MEK inhibitors [29].

Conclusions
In conclusion, the present study indicated that CIP2A overexpression was associated with poor survival in patients with NPC, and the depletion of CIP2A expression could inhibit cell viability and growth by promoting the stability of the CIP2A protein. Our findings provide new insights into the molecular mechanisms involved in the regulation of NPC progression and provide novel therapeutic targets and strategies for the treatment of NPC patients.

Clinical specimens
Eighteen freshly frozen NPC specimens and fourteen normal nasopharyngeal epithelium samples were obtained from Sun Yat-sen University Cancer Center. In addition, we collected 280 paraffin-embedded NPC specimens from our hospital between January 2003 and February 2006. None of the patients received any anti-tumor therapy prior to the biopsy sample collection. The clinical features of all patients are provided in Table 1. TNM staging was performed according to the 7 th Edition of the AJCC/UICC Cancer Staging Manual. All patients were treated with conventional two-dimensional radiotherapy, and patients with stage III-IV disease also received platinum-based concurrent chemotherapy [32]. The median follow-up time was 63.6 months (range: 5.2-91.87). This study was approved by the Institutional Ethical Review Board of Sun Yat-sen University Cancer Center, and written informed consent was obtained from each patient.

Immunohistochemistry
Sections obtained from 280 paraffin-embedded NPC specimens were tested for CIP2A expression by immunohistochemical staining, as previously described [34,35]. Briefly, samples were deparaffinized and rehydrated, and the endogenous peroxidase activity was quenched. Antigen retrieval was performed, and the sections were blocked with bovine serum albumin and subsequently incubated with an anti-CIP2A antibody (1:200; Abcam). Sections were washed and subsequently incubated with a biotinylated secondary antibody bound to a streptavidin-horseradish peroxidase complex and visualized with 3,3-diaminobenzidine. All sections were scored by two independent pathologists, and the staining index was calculated as the product of the staining intensity (1, no staining; 2, weak staining; 3, moderate staining; 4, strong staining) and the proportion of positive cells (1, <10%; 2, 10-35%; 3, 35-70%; 4, >70%).

MTT assay
CNE-2 and SUNE-1 cells were seeded in 96-well plates at a density of 1,000 cells per well. At 1, 2, 3, 4, and 5 days, the cells were stained with 20 μl of MTT dye (0.5 mg/ml, Sigma) for 4 h, after which the medium was removed, and 100 μl of dimethyl sulfoxide (Sigma) was added. The absorbance was measured at 490 nm with a spectrophotometric plate reader.
Colony formation assay CNE-2 and SUNE1 cells were seeded in six-well plates at a density of 500 cells per well and cultured for 7 or 12 days. Colonies were fixed with 4% paraformaldehyde solution, stained with 0.5% crystal violet, and counted under an inverted microscope.
Anchorage-independent soft-agar growth CNE-2 and SUNE-1 cells (2.5 × 10 4 ) were suspended in 1 ml of complete medium containing 0.66% agar (Sigma) and then applied to the top of a 1% agar/complete medium layer in six-well plates. Colonies were counted under an inverted microscope after 9 or 12 days.

Xenograft tumor model
Three-to four-week-old male BALB/c nude mice were purchased from the Medical Experimental Animal Center of Guangdong Province (Guangzhou, China). All experimental animal protocols were approved by the Animal Care and Use Ethics Committee. SUNE-1 cells stably expressing shCIP2A or scrambled control shRNA were suspended in PBS, and 1 × 10 6 cells (100 μl) were subcutaneously injected into the dorsal flank of each mouse. Tumors were examined every 3 days, and tumor volumes were calculated. On day 28, the mice were sacrificed, and the tumors were dissected and weighted.

Statistical analysis
Data are presented as the mean ± SD, and differences between groups were analyzed using Student's t-test or a chi-squared test. Receiver operation characteristic (ROC) curves were used to determine the optimal cutoff values for low and high CIP2A expression. The Kaplan-Meier method and log-rank test were used to estimate survival rates, and hazard ratios (HRs) were calculated using unadjusted univariate Cox regression analysis. Multivariate Cox regression analysis was used to test for independent prognostic factors. All statistical analyses were performed with SPSS 16.0 software, and P values of < 0.05 were considered statistically significant.