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Table 1 MACE and sRNA-seq read statistics

From: Next-generation sequencing reveals novel differentially regulated mRNAs, lncRNAs, miRNAs, sdRNAs and a piRNA in pancreatic cancer

a) MACE

     

Condition

Sample

Raw Reads

PCR-Duplicate removed

Region of interest

Sign. Upreg. RNAs

 

N1

20,406,430

11,609,003

7,811,603

 
 

N2

13,749,503

8,791,698

6,033,792

 

Normal

N3

17,404,996

10,701,183

7,024,298

963

 

N4

14,868,474

9,666,314

6,411,998

 
 

N5

18,213,260

10,782,506

7,353,927

 
 

P1

8,706,841

7,921,368

4,377,691

 
 

P2

9,940,175

8,802,579

4,250,025

1,041

PDAC

P3

8,463,912

7,489,546

4,150,706

 
 

P4

8,438,058

7,612,616

4,422,792

 
 

P5

13,350,594

11,634,367

5,405,594

 
 

P6

9,218,757

8,161,312

4,607,707

 

b) sRNA-seq

     
 

N1

19,268,787

9,886,904

6,603,800

 
 

N2

33,372,333

15,945,439

11,007,400

 

Normal

N3

22,217,672

11,571,686

7,773,570

45

 

N4

27,924,894

6,763,260

5,439,290

 
 

N5

23,421,799

9,025,877

6,482,120

 
 

P1

24,349,755

9,837,308

6,887,790

 
 

P2

15,855,377

6,966,105

5,063,220

78

PDAC

P3

19,711,102

9,580,636

6,321,340

 
 

P4

25,889,624

10,404,479

7,344,910

 
 

P5

22,130,647

11,117,354

7,402,310

 
 

P6

19,639,470

8,440,144

5,964,730

 
  1. For each sample of control (N) and PDAC (P) tissues the number of raw sequencing reads, PCR duplicate-free reads, reads mapped to regions of interest (exons -MACE or small ncRNAs -sRNA-seq) and the number of deregulated RNAs is provided for MACE and sRNA-seq libraries, respectively.
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Molecular Cancer

ISSN: 1476-4598