From: Identification of novel androgen receptor target genes in prostate cancer
CD Primers1 | Band2 | Ava II – Ava II3 | Nearby Genes4 | Position of CD Hit Relative to gene | ChIP validation5 | |
---|---|---|---|---|---|---|
 |  |  |  |  | C4-2B | LNCaP |
AT, TA | 1p35.2 | 30,152,547 – 30,152,728 | Nearest gene is 626-kb away | 4 | 2 | |
AA, TC | 1q25.2 | 178,433,288 – 178,433,456 | QSCN6[63, 67] | exon 13 | 3 | 1 |
 |  |  | LHX4 [68] | 32.7-kb 5' |  |  |
 |  |  | CEP350 | 84.2-kb3' |  |  |
 |  |  | ACBD6 | 90.6-kb 3' |  |  |
AT, AT | 2q37.3 | 241,348,804 – 241,348,990 | KIF1A | intron 23/exon 24 | 3 | 1 |
 |  |  | AQP12 | 62.4-kb 3' |  |  |
TT, TT | 3p21.1 | 53,169,093 – 53,169,401 | PRKCD[51, 53] | 0.8-kb 5' | 4 | nd |
AT, AC | 4p16.1 | 6,644,411 – 6,644,619 | MAN2B2 | intron 5 | 3 | 3 |
 |  |  | MRFAP1 | 48.7-kb 5' |  |  |
AA, TC | 7q11.23 | 72,483,118 – 72,483,317 | FZD9[69] | 2.7-kb 5' | 4 | nd |
 |  |  | BAZ1B | 10k-b 3' |  |  |
AT, AG | 7q11.23 | 72,922,165 – 72,922,474 | WBSCR28 | 4-kb 3' | 4 | 2 |
 |  |  | WBSCR27 | 27.4-kb 5' |  |  |
 |  |  | CLDN4 [70] | 37.2-kb 3' |  |  |
AA, AG | 8q24.3 | 143,094,298 – 143,094,518 | Nearest gene is 197kb away [64] | 3 | 2 | |
AC, TC | 10p12.1 | 24,584,349 – 24,584,579 | KIAA1217 | intron 2 | 4 | 3 |
AT, AG | 10q26.13 | 126,072,189 – 126,072,473 | OAT | 3.4-kb 3' | 2 | 0 |
 |  |  | LHPP | 67.9-kb 5' |  |  |
AC, TC | 11p15.4 | 1,017,234 – 1,017,529 | MUC6[58] | 10-kb 5' | 3 | 3 |
 |  |  | AP2A2 | 15-kb 3' |  |  |
AT, AT | 11q12.3 | 62,532,814 – 62,532,977 | SLC22A8 | intron 2 | 5 | 2 |
 |  |  | SLC22A6 | 23.9-kb 5' |  |  |
 |  |  | CHRM1 | 87.3-kb 5' |  |  |
AT, AT | 11q25 | 134,102,859 – 134,103,167 | Nearest gene is 315-kb away | 2 | 3 | |
AT, AT | 14q31.3 | 86,510,091 – 86,510,360 | Nearest gene is 959-kb away | 3 | 2 | |
AT, AC | 17p13.2 | 3,446,846 – 3,447,080 | TRPV1 | exon 1/intron 1 | 3 | 1 |
 |  |  | CARKL | 11.4-kb 3' |  |  |
 |  |  | TRPV3 [60, 61] | 39-kb 5' |  |  |
AC, TG | 17q25.3 | 77,480,155 – 77,480,527 | MAFG | 1.5-kb 5' | 4 | 2 |
 |  |  | PYCR1 [36, 50] | 2.5-kb 3' |  |  |
 |  |  | SIRT7 [71, 72] | 12-kb 5' |  |  |
AA, AA | 22q11.23 | 22,655,127 – 22,655,462 | GSTT2[62] | exon 4/intron 4 | 3 | 2 |
 |  |  | DDT | 3.1-kb 5' |  |  |
AG, AG | 22q13.1 | 38,101,611 – 38,101,989 | SYNGR1 | intron 2 | 3 | 2 |
 |  |  | MAP3K7IP1 | 25-kb 5' |  |  |
AC, TC | 22q13.3 | 48,707,684 – 48,707,956 | CRELD2 | 1-kb 3' | 3 | 1 |
 |  |  | ALG12 | 10-kb 5' |  |  |