Figure 6
Protein structure and representative interactions that change during the simulations. (A) View of the protein depicted as a gray tube, DNA strand in green and helices of interest are depicted as ribbons: helices 18 and 19 (linker domain) in orange, helix 16 in blue, helix 17 in red, helix 21 in yellow. (B) A closeup of the representative snapshots of the simulations depicting the interactions between helix 16 and helix 21. (C) Same as B but closeup on the interactions between helix 17 and helix 19.