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Table 1 Nearby gene mapping of validated ChIP-cloned sequences.

From: STAT5 regulation of BCL10 parallels constitutive NFκB activation in lymphoid tumor cells

Chr Start End % DNA-b. Strand Dir. Gene Name Loc.
1 212539607 212540208 40.79 + U SMYD2 I
     - U PTPN14 E
1 184551050 184551638 46.99 + U PRG4 IDS
     + D C1orf27 E
     - U TPR I
1 148762360 148762960 17.71 + U ECM1 E
     + D ADAMTSL4 E
     - U C1orf138 E
     - D APH1A E
1 85509312 85509912 18.52 + U WDR63 E
     - U BCL10 I
     - D C1orf52 E
1 172086277 172086887 3.81 + U DARS2 I
     + D ZBTB37 E
     - U SERPINC1 E
     - D CENPL E
1 210194877 210195427 35.81 + D DTL E
     - U INTS7 I
     - D LPGAT1 E
2 38751513 38752103 47.52 + U GALM I
     + D GEMIN6 E
     - U SFRS7 E
     - D HNRPLL E
3 140069314 140069963 5.83 + U FAIM E
     - U FOXL2 E
     - D PIK3CB E
4 77775984 77776232 18.02 + U SHRM I
     - U LOC345079 E
     - D   E
12 12538539 12539089 13.72 + U LOH12CR1 E
     + D CREBL2 E
     - U DUSP16 I
     - D MANSC1 E
12 22082357 22083007 41.9 + D CMAS E
     - U ST8SIA1 E
     - D ABCC9 E
12 88442012 88442661 26.03 - U WDR51B I
     - D DUSP6 E
13 102554697 102555277 9.23 + U ERCC5 E
     - D SLC10A2 E
13 73026115 73026665 34.44 - U KLF12 E
14 68177078 68177617 35.78 + U RAD51L1 E
     - U ZFP36L1 E
15 24494535 24495711 32.64 + D GABRA5 E
     - U GABRB3 I
16 73675183 73675822 40.32 + U ZNRF1 I
     + D ZFP1 E
     - U LDHD E
     - D WDR59 E
16 16389501 16389952 43.06 + U NOMO3 E
     - D ABCC6 E
19 19238022 19238623 13.61 + U CSPG3 E
     + D KIAA0892 E
     - U TM6SF2 E
     - D HAPLN4 E
X 149544804 149545374 27.66 + U MTM1 I
     + D MTMR1 E
     - U CD99L2 E
  1. Randomly selected sequences (52) were validated by cold competition EMSAs as described in the Methods. Clones (24) with greater than 50% decrease in STAT5 DNA-binding to the [32P]-labeled probe were analyzed using CEAS. Fragments within 300 kb from coding sequences (20) are summarized above. (IDS: Immediate Downstream; U: Upstream; D: Downstream; I: Intron; E: Enhancer; chr: chromosome; dir: direction; % DNA-b.: % DNA-binding)