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Table 1 List of top 20 common up-regulated genes and top 20 common down-regulated genes.

From: Gene expression profiling of cholangiocarcinoma-derived fibroblast reveals alterations related to tumor progression and indicates periostin as a poor prognostic marker

Gene

Abbreviation

Intensity

Mismatch

Ratio

Common up-regulated genes

 

of Cf

binding

Cf/Lfs

arylacetamide deacetylase (esterase)

DAC

115.92

P

956.45

sparc/osteonectin (testican 3)

SPOCK3

16.70

P

669.24

neuropeptide Y receptor Y1

NPYR

20.86

P

416.71

collagen, type XIV, alpha 1 (undulin)

COL14A1

47.74

P

245.03

growth associated protein 43

B-50

23.52

P

232.10

procollagen C-endopeptidase enhancer 2

PCPE2

117.81

P

224.83

sorbin and SH3 domain containing 2

SORB2

10.65

P

192.25

myozenin 2

MYOZ2

6.53

P

139.50

serpin peptidase inhibitor, clade B (ovalbumin), member 2 transcript variant 2

PAI2

260.13

P

133.32

doublecortin-like kinase 1

DCLK

19.11

P

112.57

formyl peptide receptor-like 2

FPRL2

3.24

P

111.02

contactin associated protein-like 3

CASPR3

5.09

P

106.75

integrin, beta-like 1 (with EGF-like repeat domains)

ITGBL1

13.35

P

82.92

collagen, type IV, alpha 6

COL4A6

76.71

P

77.06

myc target 1

MYCT1

28.15

P

73.88

S100 calcium binding protein A4

S100A4

103.88

P

72.30

phosphodiesterase 1A, calmodulin-dependent

HSPDEA1

12.50

P

71.51

neurofilament, light polypeptide 68 kDa

NEFL

5.71

P

69.33

ADAMTS-like 1

ADAMTSR1

3.24

P

68.55

early B-cell factor 1

EBF

4.57

P

60.80

ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5

SIAT7E

0.02

P

3943.41

fibrillin 2 (congenital contractural arachnodactyly)

FBN2

0.05

P

1035.17

fibroblast growth factor receptor 2

FGFR2

0.04

P

684.03

pregnancy specific beta-1-glycoprotein 5

PSG

0.07

P

349.77

Sal-like 1 (Drosophila)

SALL1

0.03

P

312.29

membrane metallo-endopeptidase

MME

0.05

P

274.25

odz, odd Oz/ten-m homolog 2 (Drosophila)

TEN-M2

0.93

P

134.10

R-spondin 3 homolog (Xenopus laevis)

RSPO3

0.4

P

70.16

bone morphogenetic protein 2

BMP2A

1.19

P

68.96

neuroligin 4, Y-linked

NLGN4Y

0.09

P

68.62

matrix-remodelling associated 5

DKFZp564I1922

1.31

P

57.89

collagen, type IV, alpha 4

COL4A4

0.67

P

49.71

bradykinin receptor B1

BRADYB1

1.61

P

48.96

microfibrillar-associated protein 4

MFAP4

0.3

P

32.40

matrix metallopeptidase 3 (stromelysin 1, progelatinase)

MMP-3

0.85

P

30.01

chromosome 13 open reading frame 15

RGC32

1.69

P

28.40

fibroblast growth factor 13

FGF13

0.38

P

28.15

ephrin receptor A5

EPHA5

0.40

P

25.68

interleukin 24

IL-24

1.68

P

25.27

  1. Only those having transcripts, not EST or clones in cDNA library are listed.
  2. P = presence to detectable intensity