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Table 1 List of top 20 common up-regulated genes and top 20 common down-regulated genes.

From: Gene expression profiling of cholangiocarcinoma-derived fibroblast reveals alterations related to tumor progression and indicates periostin as a poor prognostic marker

Gene Abbreviation Intensity Mismatch Ratio
Common up-regulated genes   of Cf binding Cf/Lfs
arylacetamide deacetylase (esterase) DAC 115.92 P 956.45
sparc/osteonectin (testican 3) SPOCK3 16.70 P 669.24
neuropeptide Y receptor Y1 NPYR 20.86 P 416.71
collagen, type XIV, alpha 1 (undulin) COL14A1 47.74 P 245.03
growth associated protein 43 B-50 23.52 P 232.10
procollagen C-endopeptidase enhancer 2 PCPE2 117.81 P 224.83
sorbin and SH3 domain containing 2 SORB2 10.65 P 192.25
myozenin 2 MYOZ2 6.53 P 139.50
serpin peptidase inhibitor, clade B (ovalbumin), member 2 transcript variant 2 PAI2 260.13 P 133.32
doublecortin-like kinase 1 DCLK 19.11 P 112.57
formyl peptide receptor-like 2 FPRL2 3.24 P 111.02
contactin associated protein-like 3 CASPR3 5.09 P 106.75
integrin, beta-like 1 (with EGF-like repeat domains) ITGBL1 13.35 P 82.92
collagen, type IV, alpha 6 COL4A6 76.71 P 77.06
myc target 1 MYCT1 28.15 P 73.88
S100 calcium binding protein A4 S100A4 103.88 P 72.30
phosphodiesterase 1A, calmodulin-dependent HSPDEA1 12.50 P 71.51
neurofilament, light polypeptide 68 kDa NEFL 5.71 P 69.33
ADAMTS-like 1 ADAMTSR1 3.24 P 68.55
early B-cell factor 1 EBF 4.57 P 60.80
ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 SIAT7E 0.02 P 3943.41
fibrillin 2 (congenital contractural arachnodactyly) FBN2 0.05 P 1035.17
fibroblast growth factor receptor 2 FGFR2 0.04 P 684.03
pregnancy specific beta-1-glycoprotein 5 PSG 0.07 P 349.77
Sal-like 1 (Drosophila) SALL1 0.03 P 312.29
membrane metallo-endopeptidase MME 0.05 P 274.25
odz, odd Oz/ten-m homolog 2 (Drosophila) TEN-M2 0.93 P 134.10
R-spondin 3 homolog (Xenopus laevis) RSPO3 0.4 P 70.16
bone morphogenetic protein 2 BMP2A 1.19 P 68.96
neuroligin 4, Y-linked NLGN4Y 0.09 P 68.62
matrix-remodelling associated 5 DKFZp564I1922 1.31 P 57.89
collagen, type IV, alpha 4 COL4A4 0.67 P 49.71
bradykinin receptor B1 BRADYB1 1.61 P 48.96
microfibrillar-associated protein 4 MFAP4 0.3 P 32.40
matrix metallopeptidase 3 (stromelysin 1, progelatinase) MMP-3 0.85 P 30.01
chromosome 13 open reading frame 15 RGC32 1.69 P 28.40
fibroblast growth factor 13 FGF13 0.38 P 28.15
ephrin receptor A5 EPHA5 0.40 P 25.68
interleukin 24 IL-24 1.68 P 25.27
  1. Only those having transcripts, not EST or clones in cDNA library are listed.
  2. P = presence to detectable intensity