Identification of tumor-associated cassette exons in human cancer through EST-based computational prediction and experimental validation

Table 3 Predicted normal (N) and tumoral (T) cassette exons analyzed by RT-qPCR.

Anatomical group	Gene¹	Exon(s) labels	Exon(s) absolute coordinates	Exon(s) length (bp)	Predicted expression specificity
CNS	ATP6V0A1 [38]	A	Chr17:37919833-37920004	172	N
CNS	CS [39]	B	Chr12:54971682-54971844	163	T
CNS	METT10 D [40]	C	Chr17:2325285-2325343	59	TT
CNS	PCNP [41]	D	Chr3:102786971-102787045	75 + 56	NN
		E	Chr3:102791749-102791804
CNS	STRADA [42]	F	Chr17:59157730-59157787	58 + 29	N
		G	Chr17:59154390-59154418
MSK	NAP1L1 [43]	H	Chr12:74748956-74749041	86 + 103	TT
		I	Chr12:74747418-74747520
MSK	SLC25A3 [44]	J	Chr12:97513636-97513757	122	TT
MSK	SLC25A3	K	Chr12:97513342-97513466	125	N
MSK	TPD52L2 [45]	L	Chr20:61977613-61977672	60	NN
MSK	TPM3 [46]	M	Chr1:152408405-152408483	79	NN

¹ In the brackets are gene specific bibliographic references.
The anatomical group, the gene name, the exon label, genomic coordinates (NCBI36/hg18), exon length and predicted expression specificity are reported.

ISSN: 1476-4598