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MutS homologue hMSH5: role in cisplatin-induced DNA damage response
Molecular Cancer volume 11, Article number: 10 (2012)
Cisplatin (cis-diamminedichloroplatinum (II), CDDP) and its analogues constitute an important class of anticancer drugs in the treatment of various malignancies; however, its effectiveness is frequently affected by mutations in genes involved in the repair and signaling of cisplatin-induced DNA damage. These observations necessitate a need for a better understanding of the molecular events governing cellular sensitivity to cisplatin.
Here, we show that hMSH5 mediates sensitization to cisplatin-induced DNA damage in human cells. Our study indicates that hMSH5 undergoes cisplatin-elicited protein induction and tyrosine phosphorylation. Silencing of hMSH5 by RNAi or expression of hMSH5 phosphorylation-resistant mutant hMSH5Y742F elevates cisplatin-induced G2 arrest and renders cells susceptible to cisplatin toxicity at clinically relevant doses. In addition, our data show that cisplatin promotes hMSH5 chromatin association and hMSH5 deficiency increases cisplatin-triggered γ-H2AX foci. Consistent with a possible role for hMSH5 in recombinational repair of cisplatin-triggered double-strand breaks (DSBs), the formation of cisplatin-induced hMSH5 nuclear foci is hRad51-dependent.
Collectively, our current study has suggested a role for hMSH5 in the processing of cisplatin-induced DSBs, and silencing of hMSH5 may provide a new means to improve the therapeutic efficacy of cisplatin.
Despite being members of the MMR protein family, the MSH5 homologues have not been demonstrated to function in MMR. Instead, studies in mice, C. elegans, and S. cerevisiae have shown that MSH5 plays an array of diverse functions ranging from meiotic recombinational DSB repair, maintenance of chromosome integrity, to DNA damage response [1–6]. Purified hMSH4-hMSH5 protein complexes have been shown to possess binding activities towards recombination intermediate structures including the Holliday junction , and endogenous hMSH5 has been shown to interact with a Holliday junction binding protein . In addition, hMSH5 forms chromosomal foci in human fetal oocytes at different stages of meiotic prophase I .
Coherent with a conjectured role in recombinational DSB repair, hMSH5 has been reported to interact with several proteins related to DSB sensing and repair, including the c-Abl tyrosine kinase and HR protein hRad51 [10, 11]. It is observed that RAD51 silencing in MSH5-deficient C. elegans oocytes can result in chromosome fragmentation , suggesting that MSH5 and RAD51 may play a synergistic role in DSB processing at least during meiosis in C. elegans. In addition, interaction between endogenous hMSH5 and hMRE11 has been observed in human alveolar basal epithelial derived lung adenocarcinoma A549 cells . Studies performed with mouse models and human patient samples have also suggested a role for hMSH5 in class switch recombination during B and T cell development, whereas hMSH5 deficiency associates with long microhomologies at Ig switch joints . These observations have raised the possibility that, through interacting with various DSB repair proteins, hMSH5 could exert multiple roles in DNA damage surveillance and DSB repair. Although the link between hMSH5 mutation and diseases in humans has not been explored, a genome-wide association study has designated the hMSH5 locus at 6p21.33 as a high risk factor for lung cancer development . In addition to its potential role in DNA repair, hMSH5 interplays with c-Abl in mediating apoptotic response in cells treated with ionizing radiation--a process involved with the activation of p73 and caspase-3 .
In the present study, we have investigated the role of hMSH5 in cisplatin-induced DNA damage response. Cisplatin is the drug of choice for combination chemotherapy of testicular cancers , and hMSH5 is known to be expressed abundantly in the testis . The cytotoxicity of cisplatin is mainly caused by its ability to form adducts with DNA. The major types of biologically active cisplatin adducts are 1,2-intrastrand crosslinks between guanines or between guanine and adenine, and, to a lesser extent, interstrand DNA crosslinks . These DNA distortions can effectively block the progression of DNA replication and activate cell cycle checkpoint [18–20]. Cisplatin-induced DNA intrastrand crosslinks can be effectively removed by nucleotide excision repair (NER) [17, 21]; however, the removal of cisplatin-induced interstrand crosslinks requires the HR pathway . The importance of recombinational repair in resolving cisplatin-induced DNA damage has also been suggested by the observation that cisplatin increases the rate of recombination, presumably attributing to the formation of DSB [23, 24]. In addition, the single-strand breaks generated from the processing of cisplatin-induced DNA lesions by NER can also be converted into one-ended DSBs when single-strand breaks collide with the replication forks . Nevertheless, it becomes increasingly clear that HR plays an essential role in the repair of cisplatin-induced DSBs that may arise from stalled replication forks. In addition, HR-deficient cells are highly sensitive to DNA damaging agents that induce DNA cross-links, due to replication blockade.
Cisplatin leads to hMSH5 induction
Analysis of the effects of cisplatin on the levels of hMSH5 expression in three cell lines--293, 293T, and A549--showed that cisplatin promoted hMSH5 induction in a time- and dose-dependent manner (Figure 1A and 1B). Significant hMSH5 induction could be observed 4 hrs post-treatment by as low as 2 μM cisplatin; in comparison to 293 and 293T cells, hMSH5 induction in A549 cells appeared to be more robust in response to higher dose of cisplatin (Figure 1A and 1B). Since over-expressed hMSH5 can be localized in both cytoplasm and nucleus [26, 27], we next examined cisplatin-triggered hMSH5 cytoplasmic and nuclear redistribution in 293T and A549 cells. Immunoblotting analysis demonstrated that the endogenous hMSH5 protein was expressed in both cytoplasm and nucleus, of which the nuclear fraction displayed a moderate level of hMSH5 induction in response to cisplatin treatment in 293T and A549 cells (Figure 1C).
It is well known that HR is required for the resolution of cisplatin-induced DSBs [22–24], and most of the cisplatin-induced DSBs are created at replication forks during S phase . Interestingly, in synchronized cells, hMSH5 was predominantly expressed in the S and G2 phases of the cell cycle, of which cells in the S phase showed the most abundant hMSH5 expression (Figure 2A). Evidently, following cisplatin treatment, a significant hMSH5 induction was observed in S phase cells (Figure 2B). The results of cytoplasmic/nuclear fractionation experiments were consistent with the view that most of the induction occurs in the nucleus of S phase cells (Figure 2C). Together, these observations raise a possibility that hMSH5 may be involved in the processing of cisplatin-induced DSBs.
c-Abl phosphorylates hMSH5 at Tyr742 in response to cisplatin-induced DNA lesions
We have previously shown that the interaction between hMSH5 and the c-Abl kinase could lead to hMSH5 tyrosine phosphorylation and c-Abl activation in response to ionizing radiation (IR) [10, 14]. To determine whether the hMSH5 and c-Abl interaction is also relevant to cisplatin-triggered DNA damage response, we analyzed c-Abl-mediated hMSH5 tyrosine phosphorylation in 293T/f-hMSH5 cells treated with cisplatin. Western blot analysis indicated that hMSH5 tyrosine phosphorylation became detectable at 2 hrs, peaked at 6 hrs, and began to fade away at 24 hrs post treatment (Figure 3A). This pattern of hMSH5 tyrosine phosphorylation appeared to be temporally correlated with cisplatin-induced hMSH5 nuclear foci formation (Figure 3B and Additional file 1: Figure S1). Approximately 9% of cells possessing hMSH5 nuclear foci were observed 1 hr after cisplatin treatment, and it was further increased to 19.2% at 6 hrs before declining to 13.7% at 24 hrs (Figure 3B). These results implicated a potential role for hMSH5 tyrosine phosphorylation in the processing of cisplatin-induced DNA lesions.
To validate that Tyr742 could also be targeted by c-Abl in human cells, immunoaffinity-purified hMSH5 proteins from cisplatin-treated and untreated 293T/f-hMSH5 and 293T/f-hMSH5Y742F cells were analyzed for tyrosine phosphorylation. As shown in Figure 4B, cisplatin elicited readily detectable hMSH5 tyrosine phosphorylation, and this phosphorylation was largely absent in cells either expressing hMSH5Y742F or treated with c-Abl kinase inhibitor imatinib. It is known that hMSH5 tyrosine phosphorylation dissociates the binding of hMSH5 to c-Abl . Consistent with this is the observation that hMSH5Y742F could not dissociate from c-Abl following cisplatin treatment (Figure 4B). In addition, hMSH5 Tyr742 phosphorylation could also be triggered by IR (data not shown), suggesting that c-Abl-mediated phosphorylation at hMSH5 Tyr742 is not unique to cisplatin-induced DNA lesions.
Cisplatin stimulates hMSH5 chromatin association
To analyze cisplatin-triggered hMSH5 chromatin association, ChIP analysis was performed with an α-acetyl histone H3 antibody using 293T/f-hMSH5 and 293T/f-hMSH5Y742F cells. Western blot was employed to determine the levels of chromatin-associated hMSH5 under various conditions. Results of these experiments indicated that cisplatin treatment significantly enhanced the association of hMSH5, but not hMSH5Y742F, with chromatin (Figure 5A). Clearly, a fraction of chromatin-bound hMSH5 was tyrosine phosphorylated, and RNAi-mediated hMSH5 silencing lessened the tyrosine phosphorylation signal along with a corresponding reduction on the level of chromatin-associated hMSH5 (Figure 5A), suggesting hMSH5 tyrosine phosphorylation is required for cisplatin-induced hMSH5 chromatin association. Since the hMSH5-hMSH4 heterocomplex has been suggested to play a role in the process of HR , we also examined whether cisplatin could trigger hMSH4 chromatin localization. The results of a similar ChIP analysis performed with 293T/f45 cells --expressing both hMSH5 and hMSH4--indicated that cisplatin could trigger hMSH4 localization to chromatin, and this hMSH4-chromatin association was entirely hMSH5-dependent as such RNAi-mediated hMSH5 silencing could diminish hMSH4-chromatin association (Figure 5B). These observations suggest that c-Abl-mediated phosphorylation at hMSH5 Tyr742 is important for cisplatin-induced chromatin association of hMSH5 and hMSH4. Because it is known that tyrosine phosphorylation dissociates hMSH5 from hMSH4 as well as c-Abl [10, 14], it is conceivable that chromatin-bound hMSH5 will have to be in the dephosphorylated form before it can interact with hMSH4. This view is consistent with the observed low levels of tyrosine phosphorylation of chromatin-bound hMSH5 (Figure 5A).
hMSH5 facilitates the repair of cisplatin-induced DNA lesions
The appearance of γ-H2AX foci is an intrinsic biomarker for the extent of DSB formation and can be used to assess the combined effects of DNA damage and DNA lesion repair . It is known that the processing of cisplatin-induced DNA lesions coincides with DSB formation . Therefore, in order to analyze the effects of hMSH5 on the processing of cisplatin-induced DSBs, γ-H2AX foci positive cells were quantified at 24 hrs post-cisplatin treatment. Approximately 39.6% of 293T cells and 35.5% of 293T/f-hMSH5 cells were γ-H2AX foci positive (Figure 5C and Additional file 1: Figure S2). The small difference between these two cell lines indicates that the effects of exogenously over-expressed hMSH5 can be sufficiently masked by cisplatin-triggered induction of endogenous hMSH5 (Figure 5C). However, under identical experimental conditions, expression of hMSH5Y742F or silencing of hMSH5 significantly increased the γ-H2AX positive population to about 62.5% and 69.4%, respectively (Figure 5C), suggesting that hMSH5 deficiency can significantly delay the resolution of cisplatin-induced DSBs.
Since the key HR protein hRad51 coexists with hMSH5 and c-Abl in the same protein complex [10, 11], and Rad51 has been implicated in the repair of cisplatin-induced DSBs , we next investigated the possibility that hMSH5 functions together with hRad51 in the processing of cisplatin-induced DNA lesions. The results of immunostaining experiments demonstrated that, in response to cisplatin, both hMSH5 and hRad51 formed nuclear foci in both 293T and A549 cells (Additional file 1: Figure S3). To determine whether the formation of cisplatin-triggered hMSH5 foci was hRad51-dependent, RNAi-mediated hMSH5 and hRad51 knockdown were performed (Figure 5D). As shown in Figure 5E, the formation of cisplatin-induced hMSH5 foci was significantly diminished with the knockdown of either hMSH5 or hRad51 (left panel). However, the formation of cisplatin-induced hRad51 foci was not affected by the silencing of hMSH5 (Figure 5E, right panel), suggesting that hMSH5 acts downstream of hRad51 in recombinational processing of cisplatin-induced DSBs.
hMSH5 deficiency renders cells more sensitive to cisplatin toxicity
Cisplatin is known to induce G2/M arrest, and defective recombination often renders cells more sensitive to its toxic effects. Therefore, we next analyzed the effects of hMSH5 deficiency on cisplatin-triggered G2/M arrest and survivability. Specifically, cell cycle analysis was performed with cisplatin-treated 293T, 293T/f-hMSH5, 293T/f-hMSH5Y742F, and hMSH5-silenced 293T cells over a period of 72 hrs, in which the highest level of G2/M arrest occurred 24 hrs after cisplatin treatment (Figure 6A). The baseline levels of G2/M cells (i.e. at zero hr time point) for 293T, 293T/f-hMSH5, and 293T/f-hMSH5Y742F were identical (Figure 6A). However, there was a slight increase of the basal G2/M population for hMSH5-silenced 293T cells, presumably due to the effects of transient transfection (Figure 6A). Although all cell lines displayed G2/M arrest following cisplatin treatment, cells with hMSH5Y742F or hMSH5 RNAi had significantly larger G2/M populations especially at late time points (Figure 6A). By 24 hrs, 293T/f-hMSH5Y742F and hMSH5 knockdown cells, as compared to 293T cells, increased G2/M arrest by 22.7% and 17.8%, respectively (Figure 6A). Moreover, cells with defective hMSH5 were unable to resume normal cell cycle distribution at 72 hrs post-treatment, while 293T and 293T/f-hMSH5 cells were able to return to normal cell cycle distribution starting at 48 hrs (Figure 6A).
To validate whether cells harboring defective hMSH5 could confer a sensitive phenotype to cisplatin toxicity, MTT assays and clonogenic survival analyses were performed with 293T, 293T/f-hMSH5, and 293T/f-hMSH5Y742F cells treated with cisplatin. Evidently, 293T/f-hMSH5Y742F cells were very sensitive to the toxic effects of cisplatin in both the MTT and clonogenic survival assays, whereas over-expression of hMSH5 appeared to provide a moderate protection to cisplatin toxicity (Figure 6B and 6C). Consistent with the idea that hMSH5 functions together with hRad51 in the process of HR, Rad51-deficient cells have also been shown to exhibit a cisplatin-sensitive phenotype .
The dominant negative effects exerted by the phosphorylation-resistant mutant hMSH5Y742F may be attributed to competition between hMSH5Y742F and the endogenous hMSH5 for binding to partner proteins such as c-Abl, hRad51, hMRE11 and hMSH4. This view is supported by the observed normal interaction of hMSH5Y742F with c-Abl or hMSH4 (Additional file 1: Figure S4). Because c-Abl-mediated hMSH5 tyrosine phosphorylation is known to reduce hMSH5 interaction with c-Abl and hMSH4 , expression of hMSH5Y742F could also disrupt the dynamic composition of its associated protein complex. Together, this study suggests a role for hMSH5 in recombinational repair of cisplatin-induced DSBs.
Our current study has demonstrated an important role for hMSH5 in the processing of cisplatin-elicited S phase-dependent DSBs. Like other HR repair proteins, hMSH5 is predominantly expressed during S and G2/M phases of the cell cycle. Given the observation that silencing of hRad51 can significantly compromise the formation of cisplatin-induced hMSH5 foci, it is conceivable that hMSH5 acts downstream of hRad51 in the DSB repair process. Disruption of hMSH5 function either by RNAi or by the over-expression of a phosphorylation-deficient mutant significantly increased the number of cells displaying γ-H2AX foci at 24 hrs after cisplatin treatment, indicating an increase in the retention of cisplatin-induced DSBs. In addition, disruption of hMSH5 enhances a sustained cisplatin-triggered G2 arrest, thereby rendering cells more sensitive to cisplatin toxicity. It appears that the reduction of clonogenic survivability correlates well with the levels of γ-H2AX foci in 293T, 293T/f-hMSH5, and 293T/f-hMSH5Y742F cells at 24 hrs after cisplatin challenge. This observation is consistent with previous reports showing that the level of γ-H2AX foci retention 24 hrs after treatment is a useful indicator for cisplatin-mediated cell killing [28, 34]. Although the precise role of hMSH5 in this process remains to be delineated, the current evidence collectively supports a scenario by which hMSH5 functions downstream of hRad51 in recombinational repair of cisplatin-induced DSBs.
Due to its radio-sensitizing activity, cisplatin has been frequently used in combination chemoradiation therapy of human malignancies . Presently, however, the mechanisms underlying the effects of this radiosensitizer are still being studied. It is suggested that cisplatin adducts can block the repair of ionizing radiation-induced DSBs by the nonhomologous end-joining pathway [35, 36]. However, the results of our current study have raised another possibility that cisplatin-triggered hMSH5 induction may potentially contribute to the effectiveness of cisplatin combination chemoradiation therapy. It is known that higher levels of hMSH5 promote IR-induced apoptosis . Thus, in spite of the fact that cisplatin-triggered hMSH5 induction can facilitate the repair of cisplatin-induced DSBs, the higher levels of hMSH5 could promote a robust apoptotic response to IR during cisplatin combination chemoradiation therapy.
In addition to hMSH5, other MMR proteins are also involved in cisplatin-triggered DNA damage repair and response. In fact, the roles of several other MMR family members in mediating cellular responses to cisplatin-induced DNA lesions have been studied [37–46]. As a whole, these studies highlight two opposite effects of individual MMR proteins on cellular responses to cisplatin toxicity. By functioning in the recognition and signaling of cisplatin-induced DNA lesions, MMR proteins can promote cell killing. On the other hand, they can directly participate in the processing of cisplatin-induced DSBs, thereby exerting a protective effect. It has been shown that hMSH2 recognizes cisplatin-induced DNA lesions through direct binding of DNA-cisplatin adducts [41, 42]. Cells defective in the expression of hMSH2 or hMLH1 often exhibit a 2- to 4-fold increase in resistance to cisplatin in comparison to corresponding controls [37, 39, 40, 44–46], indicating that hMSH2 and hMLH1 are involved in mediating cisplatin-triggered DNA damage signaling. Accordingly, cisplatin-resistant cells derived from repetitive drug selection are frequently associated with defective hMSH2 or hMLH1 expression [47–49]. However, the effects of hMSH2 or hMLH1 in cellular sensitization to cisplatin have not been observed in a few other studies, reflecting the complex nature of cellular response to cisplatin-induced DNA damage (reviewed in ref. ). It is conceivable that the roles of hMSH2 and hMLH1 may be regulated differently in the processes of repair and DNA damage signaling in different cell types. In addition, difference in cell cycle regulation may be another important factor in controlling various levels of cellular sensitivity to cisplatin. In fact, it is demonstrated recently that disruption of RPA's role in cell cycle regulation synergistically enhances the cytotoxic effects of cisplatin .
In contrast to aforementioned observations, a recent study has revealed an important role for hMSH3 in the repair of cisplatin-induced DSBs . Using an isogenic HCT116-derived cell line in which the expression of hMSH3 can be controlled, Goel and colleagues  demonstrated that hMSH3 deficiency sensitizes cells to both cisplatin and oxaliplatin toxicity, and this effect of hMSH3 is not dependent on the canonical MMR pathway. In addition, in response to oxaliplatin treatment, hMSH3-deficient cells sustain a higher level of γ-H2AX, suggesting that hMSH3 plays an important role in DSB repair . Intriguingly, the role of hMSH5 in mediating cellular response to cisplatin-induced DSBs bears a resemblance to that reported for hMSH3. In spite of using different cell lines and different ways to disrupt gene expression, cells deficient in hMSH5 or hMSH3 show comparable levels of reduction in clonogenic survivability in response to the same doses of cisplatin (Figure 6C) . Although the timing for the elevation of treatment-induced γ-H2AX appears to be different in cells subjected to RNAi-mediated silencing of hMSH5 or hMSH3 (Figure 5C) , these observations warrant future studies to determine whether these two MutS homologues act in the same repair process of cisplatin-induced DSBs.
Intuitively, fertility preservation in male cancer patients undergoing chemotherapy is highly desired, and the relatively high levels of hMSH5 expression in the testis would be expected to provide a protection against cispaltin-induced DSBs. However, this effect of hMSH5 undoubtedly requires coordinated actions from a network of proteins involved in the repair process, and the efficiency of this pathway in various cell types in the testis is presently unknown. Since cisplatin represents a main treatment choice for testicular cancers , it would be interesting to investigate the relative expression levels of hMSH5 in testicular tumors and matched normal testicular tissues. This information will be useful for assessing the value of using hMSH5 as a prognosis biomarker. Finally, our study has implicated that combining hMSH5 disruption with cisplatin treatment might be an alternative strategy for enhancing the therapeutic effects of cisplatin.
In summary, our study has demonstrated a role for hMSH5 in protecting cells from cisplatin-induced DNA damage. Inactivation of hMSH5 by RNAi or by expressing a phosphorylation-deficient hMSH5 mutant elevates cisplatin-induced G2 arrest and renders cells susceptible to cisplatin toxicity.
Collectively, our data is compatible with the idea that hMSH5 is involved in HR repair of cisplatin-induced DSBs.
Cell lines and cell cultures
Stable cell line 293T/f-hMSH5Y742F was generated by a similar procedure that was previously described for 293T/f-hMSH5 . All human cell lines were maintained in DMEM (Invitrogen, Carlsbad, CA) containing 10% FBS (Biomeda, Foster City, CA) and 1x Penicillin-Streptomycin (Invitrogen). Cisplatin (cis-diamminedichloroplatinum (II) or CDDP) (Sigma, St. Louis, MO) was used for the induction of DNA damage, and imatinib (Novartis, Basel, Switzerland) was used to inhibit c-Abl kinase activity. Cell synchronization at different cell cycle phases was performed by the use of standard hydroxyurea (Sigma), double thymidine (Sigma), and nocodazole (Sigma) based procedures [37, 51]. Cell cycle analysis was performed with the standard propidium iodide (Invitrogen) staining procedure as described previously , in which at least 10,000 cells were analyzed by the use of FlowJo V8 (Tree Star Inc., Ashland, OR). Clonogenic survival and MTT analysis were performed by the same procedures described previously [14, 52].
Antibodies, Western blot analysis, and immunoprecipitation (IP)
Antibodies used for performing IP and Western blot analysis included α-FLAG M2 (Sigma, St. Louis, MO), α-hMSH5 , α-hMSH4 , α-γ-H2AX (Upstate Laboratories, Inc., East Syracuse, NY), α-hRad51 (Calbiochem, Gibbstown, NJ), α-hMRE11 (Novus Biologicals Inc., Littleton, CO), α-c-Abl (BD Pharmingen, San Diego, CA), α-p-Tyr (Cell Signaling, Beverley, MA), α-α-tubulin (Sigma, St. Louis, MO), α-acetyl histone H3 (Upstate), α-histone H4 (Cell Signaling), and α-RNAPII (Upstate). IP and Western blotting were performed as described previously .
Immunofluorescence analysis of nuclear foci
Analysis of hMSH5, hRad51, and γ-H2AX foci formation was carried out by following a standard immunofluorescence protocol. Primary and secondary antibodies used for these experiments included α-hMSH5 , α-hRad51 (Ab-1) pAb (Calbiochem), α-hRad51 (14B4) mAb (Novus Biologicals Inc.), α-γ-H2AX (Upstate), Oregon Green goat α-mouse IgG and Texas Red goat α-rabbit IgG (Invitrogen, Carlsbad, CA). Cells were mounted with Vectashield mounting media containing DAPI (Vector Laboratories, Birminham, CA) and visualized by a Zeiss Axioplan fluorescence microscope. For nuclear foci quantification, cell counting was performed at least three times with a total of > 200 cells counted.
Bacterial Protein expression and purification
Expression of various hMSH5 cp-1 Tyr-to-Phe mutants and c-Abl in BL21(DE3)-RIL cells was performed using the same experimental procedure as described previously . PCR-based site-directed mutagenesis was adapted to generate DNA sequences encoding hMSH5 Tyr-to-Phe mutations. Recombinant hMSH5 cp-1 or hMSH5 cp-1 Tyr-to-Phe proteins were purified under native conditions by the use of TALON Metal Affinity Resins (Clontech, Mountainview, CA) as described previously .
Nuclear and cytoplasmic fractions were prepared by the use of NE-PER Nuclear and Cytoplasmic Extraction Reagents (Pierce, Thermo Fisher Scientific Inc., Rockford, IL) in accordance with the manufacturer's recommendation. Western blots with α-RNAPII (Upstate) and α-α-tubulin (Sigma) antibodies were performed to validate successful fractionation.
Chromatin association assays
Chromatin immunoprecipitation (ChIP) was performed according to the manufacturer's recommendation (EZ-ChIP kit, Millipore, Billerica, MA). Antibodies used in the experiments included α-acetyl histone H3 (Upstate), mouse IgG (Upstate), α-p-Tyr (Cell Signaling), α-hMSH5 , α-hMSH4 , and α-histone H4 (Cell Signaling). To analyze chromatin-associated proteins, bulk chromatin was immunoprecipitated with 10 μg of α-acetyl-histone H3. Immunoprecipitates were then subjected to Western blotting analysis.
The generation of pmH1P-based RNAi constructs was performed as previously described . The efficiency of RNAi-mediated gene silencing was validated by Western blotting, and those displayed greater than 50% knockdown were selected. The RNAi targets were hMSH5 sh-2  and hRad51 sh-1 (5'-AAGGAGAGTGCGGCGCTTC).
School of Molecular Biosciences, Mail Drop 64-7520, College of Veterinary Medicine, Washington State University, Pullman, WA 99164, USA
cisplatin (cis-diamminedichloroplatinum (II))
MutS homologue 5
Nucleotide excision repair
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We thank Dr. Nianxi Zhao and Yen-Lin Chu for technical assistance. Imatinib was kindly provided by Novartis Pharma AG. Basel, Switzerland. This work was supported in part by NIH Grant GM084353 (C.H.).
The authors declare that they have no competing interests.
JT carried out most of the experiments and participated in the preparation of the manuscript. XW participated in reagent preparation, interpretation of critical data, and manuscript preparation and revision. CH conceived of the study and participated in its design and coordination as well as manuscript preparation. All authors read and approved the final manuscript.
Electronic supplementary material
Additional file 1: Representative images of CDDP-induced hMSH5 foci formation at 1, 6, and 24 hrs post treatment. Cells were treated with 10 μM CDDP for 2 hrs and hMSH5 foci formation was analyzed at indicated time points after treatment. Figure S2. Representative images of cisplatin-induced γ-H2AX foci formation in 293T, 293T/f-hMSH5, 293T/f-hMSH5Y742F, and 293T hMSH5 RNAi cells (48 hrs post transfection with pmH1P-Bsd/hMSH5 sh-2). (A) Untreated cells were examined in parallel to establish the basal levels of γ-H2AX signal in these cell lines. (B) Cells were treated with 10 μM cisplatin for 2 hrs followed by γ-H2AX foci analysis at 24 hrs after cisplatin removal. Nuclei are counterstained with DAPI and merged images are provided. Figure S3. Representative images of CDDP-induced γ-H2AX, hRad51, and hMSH5 foci formation in 293T and A549 cells. (A) Analysis of CDDP-triggered γ-H2AX and hMSH5 foci formation. (B) Analysis of CDDP-triggered γ-H2AX and hRad51 foci formation. (C) Analysis of CDDP-triggered hRad51 and hMSH5 foci formation. Consistent with hMSH5 cytoplasmic and nuclear distribution patterns, CDDP-induced hMSH5 foci appear to be present in both cytoplasm and nucleus, whereas CDDP-induced γ-H2AX and hRad51 foci are predominately nuclear. Arrows indicate potential overlaps of two different signals. Figure S4. Effects of hMSH5 Tyr742-to-Phe mutation on its interaction with hMSH4 and c-Abl. (A) Co-IP analysis of the interaction between hMSH5 cp-1 Y742F and hMSH4. The results indicated that hMSH5 cp-1 Y742F could interact with hMSH4 as efficient as hMSH5 cp-1. (B) Co-IP analysis of the interaction between hMSH5Y742F and c-Abl. hMSH5Y742F interacted with c-Abl in the same manner as hMSH5 did. (PDF 6 MB)
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Tompkins, J.D., Wu, X. & Her, C. MutS homologue hMSH5: role in cisplatin-induced DNA damage response. Mol Cancer 11, 10 (2012). https://doi.org/10.1186/1476-4598-11-10
- Homologous recombination