OncomiR-196 promotes an invasive phenotype in oral cancer through the NME4-JNK-TIMP1-MMP signaling pathway
- Ya-Ching Lu†1,
- Joseph T Chang†2,
- Chun-Ta Liao3,
- Chung-Jan Kang3,
- Shiang-Fu Huang3,
- I-How Chen3,
- Chi-Che Huang3,
- Yu-Chen Huang4,
- Wen-Ho Chen4,
- Chi-Ying Tsai4,
- Hung-Ming Wang5,
- Tzu-Chen Yen6,
- Guo-Rung You1,
- Chang-Hsu Chiang1 and
- Ann-Joy Cheng1Email author
© Lu et al.; licensee BioMed Central Ltd. 2014
Received: 29 May 2014
Accepted: 11 September 2014
Published: 19 September 2014
MicroRNA-196 (miR-196), which is highly up-regulated in oral cancer cells, has been reported to be aberrantly expressed in several cancers; however, the significance of miR-196 in oral cancer has not yet been addressed.
Cellular functions in response to miR-196 modulation were examined, including cell growth, migration, invasion and radio/chemosensitivity. Algorithm-based studies were used to identify the regulatory target of miR-196. The miR-196 target gene and downstream molecular mechanisms were confirmed by RT-qPCR, western blot, luciferase reporter and confocal microscopy analyses. miR-196 expression was determined in paired cancer and adjacent normal tissues from oral cancer patients.
Both miR-196a and miR-196b were highly over-expressed in the cancer tissue and correlated with lymph node metastasis (P = 0.001 and P = 0.006, respectively). Functionally, miR-196 actively promoted cell migration and invasion without affecting cell growth. Mechanistically, miR-196 performed it's their function by inhibiting NME4 expression and further activating p-JNK, suppressing TIMP1, and augmenting MMP1/9.
miR-196 contributes to oral cancer by promoting cell migration and invasion. Clinically, miR-196a/b was significantly over-expressed in the cancer tissues and correlated with lymph node metastasis. Thus, our findings provide new knowledge of the underlying mechanism of cancer metastasis. miR-196 may serve as a promising marker for better oral cancer management.
Novelty and impact statement
In this study, we elucidated the significance of miR-196 in oral cancer. miR-196 promotes cell migration and invasion. Mechanistically, miR-196 exerts these functions by targeting to the NME4 molecule and regulating the downstream JNK-TIMP1-MMP signaling pathway. In addition, both miR-196a and miR-196b were remarkably up-regulated in oral cancer tissues and correlated with lymph node metastasis. Thus, miR-196 could be a promising marker for better management of oral cancer.
Oral cancer is one of the most prevalent cancers worldwide. Despite improvements in diagnosis and treatment in recent decades, the survival rate for oral cancer has not significantly changed due to the development of distant metastases and therapeutic resistance[2–4]. It is essential to thoroughly investigate the pathogenesis of this disease to provide fundamental knowledge for future clinical applications.
MicroRNAs (miRNAs) constitute an abundant class of small, non-coding RNA molecules that regulate gene expression by targeting mRNAs to induce translational repression or mRNA degradation. Increasing evidence indicates that miRNAs contribute to the development of cancer by negatively regulating target gene expression, and therefore they can function as tumor suppressors or oncogenes[6, 7]. Recently, miRNA screening in several types of cancer has identified unique expression profiles associated with specific tissues or clinical features, including head and neck cancer[8, 9]. To improve the understanding of the role of miRNAs in oral cancer, we previously performed global miRNA profiling of normal keratinocyte and cancer cell lines. We discovered 23 miRNAs with significantly altered expression in cancer cells, including miR-196. miR-196 has been reported to be aberrantly expressed in various malignancies, including melanoma, leukemia, and glioblastoma[11–21]. However, the underlying mechanism by which these molecules cause malignancy remains unclear.
In the present study, we characterized the function of miR-196 and elucidated it’s molecular mechanism in oral cancer. We found that the miR-196 family positively regulated cell invasion and migration, and had no effect on cell growth. Mechanistically, miR-196 exerted their effects by directly targeting and inhibiting non-metastatic cells 4 (NME4) protein expression to regulate the JNK-TIMP1-matrix metalloproteinase (MMP) signaling pathway. We revealed that both miR-196a and miR-196b were highly over-expressed in the cancer tissues of patients with oral cancer, demonstrating the clinical significance of these molecules during cancer progression.
Materials, subjects, and methods
Cells and cell lines
Four oral cancer cell lines (OECM1, SAS, CGHNC8, and CGHNC9) and two normal keratinocyte cell lines (CGHNK2 and CGHNK4) were used. CGHNK2 and CGHNK4 cells are HPV-immortalized lines of normal keratinocytes that were described previously. The immortalized normal keratinocyte cells were maintained in KSFM medium (Life Technologies, Inc., Gibco BRL, Rockville, MD, USA). The cancer cell lines were grown in 100% DMEM or RPMI 1640 medium containing 10% fetal bovine serum (Life Technologies, Inc.). All cells were cultured at 37°C in a humidified atmosphere with 5% CO2.
Cloning and transfection of miR-196–specific plasmids and inhibitory antagomir oligonucleotides
All the oligonucleotides used in this study, including the specific stem-loop sequences of miR-196a, miR-196b, the inhibitory antagomir oligonucleotides (Anti-196a and Anti-196b), random sequence for antagomir control (RC) are listed in Additional file1: Table S1. The stem-loop oligonucleotides were inserted into the multiple cloning site of the pcDNA 3.1(+) expression vector (Invitrogen, Carlsbad, CA, USA) to construct the miR-196 overexpression plasmids. To promote miR-196 expression, 3 μg of miR-196 plasmid was transfected into cells plated in 100-mm dishes. The miR-196a, miR-196b antagomir and the random sequence oligonucleotides for controls were purchased from TRI-I Biotech, Inc. (New Taipei City, Taiwan). To suppress miR-196 expression, 300 μM antagomir oligonucleotides were transfected into the cells. Transfection was performed using the Lipofectamine 2000™ reagent (Invitrogen) in OPTI-MEM medium (Invitrogen), and the cells were incubated at 37°C in a humidified atmosphere with 5% CO2 for 10 h, similarly as previously described. Afterward, the medium was replaced with fresh complete medium, and the cells were continuously cultured.
Cell migration assay
Cell migration was determined using an in vitro wound healing assay as previously described. After transfection of the miR-196 overexpression plasmids or the antagomir oligonucleotides, 3.5 × 104 cells were seeded in ibidi® culture inserts (ibidi LLC, Verona, WI, USA) on top of a 6-well plate. After 8 h of incubation, the culture inserts were detached to form a cell-free gap in the cell monolayer. After changing to culture medium containing 1% FCS, cell migration of toward the gap area was photographed every 6 h. All the experiments were performed at least three times independently and that typical results were shown. In each sample, the invasion ability was quantified by comparing the distance of the cell-free gap after normalization to the control group. The error bars shown in the relevant figures indicated the standard deviation of the quantification results in all experiments.
Cell invasion assay
The invasive abilities of the cells were determined by culturing the cells on a polycarbonate membrane coated with Matrigel (Becton Dickinson Biosciences, Franklin Lakes, NJ, USA) in a Millicell invasion chamber (Millipore, Billerica, MA, USA) as previously described. Briefly, Matrigel was first coated onto the membrane of the Millicell upper chamber for 12 h at 37°C. After transfection of the miR-196 overexpression plasmids or antagomir oligonucleotides, the cells were seeded in the upper chamber with 1% FBS medium. The lower chamber contained complete culture medium (containing 10% FBS) to trap invading cells. After incubation at 37°C, the cells that invaded through the Matrigel-coated membranes into the lower chamber were stained with crystal violet and photographed. All the experiments were performed at least three times independently and that typical results were shown. In each sample, the invasion ability was quantified by comparing the density of crystal violet dye after normalization to the control group. The error bars shown in the relevant figures indicated the standard deviation of the quantification results in all experiments.
mRNA and miRNA analysis by reverse transcription-quantitative PCR (RT-qPCR)
Total RNA was isolated from cells using TRIzol reagent (Gibco BRL). For mRNA determination, RT was performed as previously described. For miRNA determination, the revere transcription was performed as previously described using miR-196–specific stem-loop RT primers and assay kits (ABI, Forest City, CA, USA) according to the manufacturer’s suggested protocol. The PCR primers used for target genes are list in Additional file1: Table S1. The results of real-time PCR, recorded as threshold cycle numbers, were normalized against an internal control (U6 RNA for miRNAs or GAPDH for mRNA). The comparative threshold cycle (ΔΔCt) method was used to determine the gene expression. All the experiments were performed duplicate for at least three times. The error bars shown in the relevant figures indicated the standard deviation of the quantification results in all experiments.
Protein extraction and western blot analysis
Protein extraction and western blot analysis were performed as previously described. Briefly, cellular proteins were extracted using lysis buffer by incubating the cells on ice for 30 min. Samples were centrifuged at 14,000 g for 30 min, and the supernatant was collected. The protein samples were boiled at 95°C for 5 min, separated by electrophoresis on 10% polyacrylamide gels containing 0.1% SDS, and transferred to nitrocellulose membranes. The membranes were incubated with primary followed by horseradish peroxidase-conjugated secondary antibodies. The primary antibodies used in this study are listed in Additional file1: Table S2. The membranes were developed using an ECL developing solution (Millipore) followed by autoradiography. All the experiments were performed at least three times independently and that typical results were shown. In each sample, the protein expression shown in each band was quantified after normalization to the GAPDH expression level. The error bars shown in the relevant figures indicated the standard deviation of the quantification results in all experiments.
Luciferase reporter assay for the NME4 3′-UTR
The pMIR-REPORT firefly luciferase vector plasmid (pMIR, Ambion, Grand Island, NY, USA) was used. The 3′-UTR region of wide-type NME4 was amplified by PCR and cloned downstream of the luciferase vector (p-UTR-WT). A mutant sequence was also cloned as a validation plasmid (p-UTR-mut). pMIR, p-UTR-WT, and p-UTR-mut was co-transfected with the miR-196–specific antagomirs or overexpression plasmids into OECM1 or SAS cells. The pRL-SV vector (Promega, Madison, Wisconsin, USA) containing Renilla luciferase was also transfected for each condition as a reference control. Firefly and Renilla luciferase activities were measured using the Dual-Luciferase Reporter Assay System (Promega) according to the manufacturer’s instructions. All the experiments were performed triplicate for at least three times, and the similar results were obtained. The error bars shown in the relevant figures indicated the standard deviation of a triplicate experiment.
Immunofluorescence staining and confocal microscopy
Immunofluorescence staining and confocal microscopy were performed as previously described. Briefly, cells were seeded onto coverslips coated with poly-L-lysine and incubated overnight at 37°C. After washing, the cells were fixed with formaldehyde, permeabilized with a permeation buffer, and blocked with 1% FBS. After overnight incubation with primary antibodies, the coverslips were incubated with fluorescence-conjugated secondary antibodies (Molecular Probes, Invitrogen, Carlsbad, CA, USA). The coverslips were then mounted with mounting medium containing DAPI dye (Vector Laboratories, Burlingame, CA, USA), and the fluorescence was visualized using a confocal laser microscope (Leica TCS Sp2 MP).
Patients and clinical association study and statistical analysis
Characteristics 54 patients with oral cancer, and the association of miR-196a and miR-196b expressions with clinicopathological status
Characteristics ( n )
low ( n ,%)
high ( n ,%)
low ( n ,%)
high ( n ,%)
≤ 55 years old (30)
> 55 years old (24)
Betel quid chewing
pN + (22)
I - II (19)
III - IV (35)
# P value
For each tissue, total RNA was extracted and subjected to miR-196a and miR-196b analyses as described previously. To define the relative levels of miR-196 in the clinical samples, the expression level of each tumor sample was normalized to an internal control (U6 RNA) and compared with that of normal tissue from the same patient. The cutoff points were determined after calculating the receiver operating characteristic (ROC) curve for best fit of sensitivity and specificity. Expression levels greater than 15-fold for miR-196a and 7-fold for miR-196b in tumor tissues compared to the expression in normal tissue were defined as ‘high.’ Level. The Pearson chi-square test was used to examine the association of miR-196 expression with clinicopathologic features, including TNM stage. Survival curves were calculated by the Kaplan-Meier method with a log-rank test. All P values were two-sided, and the significance level was set at P < 0.05.
Both miR-196a and miR-196b promote cell migration and invasion without affecting cell growth
The potential effect of miR-196 on and chemo/radio-sensitivity was also examined using a clonogenic survival assay. Silencing of miR-196a or miR-196b had no effect on cell survival in response to cisplatin treatment (Additional file2: Figure S2A). However, miR-196a and miR-196b had differential effects on radiosensitivity. Whereas miR-196b depletion had no effect, both cell lines were significantly more sensitive to radiation after miR-196a silencing (Additional file2: Figure S2B). This result suggests that miR-196a, but not miR-196b, protects cells against radiation damage.
Cell migration and invasion were next analyzed using in vitro wound healing and Matrigel invasion assays. As shown in Figure 1B, miR-196 silencing resulted in slower migration toward the gap area in both OECM1 and SAS cells, with reductions of 28-50% and 41-62%, respectively, for miR-196a and miR-196b at 12 hours. Consistently, miR-196 over-expression significantly enhanced cell migration in both cell lines, with 1.9-2.7- and 1.7-2.2-fold increases, respectively, for miR-196a and miR-196b at 9 hours. Similar effects were also observed in cell invasion ability (Figure 1C). Depletion of miR-196a or miR-196b dramatically reduced the invading cells by 40-50% in both OECM1 and SAS cells. Consistently, miR-196a or miR-196b over-expression significantly enhanced cell invasion by 2.2-fold in both cell lines. Supporting these cellular findings, the expressions of cell adhesion molecules N-cadherin and fibronectin were up-regulated in the miR-196 over-expressing cells (Figure 1D). Collectively, miR-196a and miR-196b promote migration and invasion in oral cancer cells but exhibit minimal effects on cell growth.
NME4 is a direct regulatory target of miR-196
To identify the potential target of miR-196, computational prediction software, including PicTar, miRanda, and TargetScan, was used. These programs identified common candidates for both miR-196a and miR-196b (Additional file2: Figure S3). The expression of these genes was further confirmed by RT-qPCR in response to miR-196 modulation. Four genes (ABCB9, HOXA5, MGATA4, and NME4) were upregulated by more than 20% after miR-196 depletion, whereas three genes (HOXB6, SMCR8, and NME4) were downregulated by more than 20% after miR-196 overexpression (Additional file2: Figure S3). Of these genes, only the expression of NME4 changed consistently in both confirmation studies. Therefore, NEM4 is a potential miR-196 regulatory target.
To determine the association of miR-196 and NME4, the expression levels of these molecules were examined in two lines of normal keratinocytes and four oral cancer cell lines. As shown in Figure 2A, miR-196 was significantly up-regulated in all cancer cell lines compared to those in normal cells, with 92- and 71-fold higher in average for miR-196a and miR-196b respectively. By contrast, NME4 expression was reduced in all cancer cell lines at both mRNA (3.9 fold) and protein levels (2.3 fold) (Figures 2B). This reverse correlation between these molecules further suggests that NME4 is a regulatory target of miR-196 (Figures 2C).
NME4 suppressed the effects of miR-196 on cell migration and invasion
Cellular function of miR-196 occurs through the NME4-JNK-TIMP1-MMP1/9 molecular pathway
The MMP family of proteins (MMP1, MMP2, and MMP9) and their tissue inhibitor TIMP1, which can promote or inhibit the digestion of the extracellular matrix[30, 31] were also examined (Figure 4A). Consistently, exogenous expression of miR-196a or miR-196b suppressed TIMP1 expression and enhanced MMP1 and MMP9 expression. Consistently, exogenous NME4 elevated TIMP1 expression but suppressed MMP1 and MMP9 expression. These results suggest that miR-196 promotes cell invasion through the NME4-JNK pathway, leading to the suppression of TIMP1 activity and elevation of MMP1/9 activity.
To determine whether JNK phosphorylation affects MMP expression, the JNK inhibitor SP600125 was used. As shown in Additional file2: Figure S5, the treatment with SP600125 (0–50 μM) suppressed phospho-c-Jun (p-c-Jun) expression with a concomitant increase in TIMP1 expression and decrease in MMP1/9 expression. These concentration-dependent alterations suggest that TIMP1 and MMP1/9 are downstream targets of p-JNK and p-c-Jun.
To validate the regulation of the miR-196-NME4-pJNK-TIMP-MMP pathway, immunofluorescence staining and confocal microscopy were performed. As shown in Figure 4B, exogenous miR-196 reduced NME4 expression and elevated p-JNK and MMP9 expression compared to the findings in the control. On the contrary, exogenous NME4 reduced p-JNK and MMP9 expression. Introduction of NME4 in miR-196–overexpressing cells reversed the effect of miR-196 on p-JNK and MMP9 expression. Furthermore, this molecular pathway was also confirmed in another oral cell line (SAS) (Additional file2: Figure S6). Taken together, these results suggest that miR-196 exerts it's effect through the NME4-pJNK-TIMP1-MMP1/9 pathway (Figure 4C).
High expression of miR-196a and miR-196b in cancer tissues correlates with the clinical N-stage
To determine miR-196 downstream regulatory mechanism in vivo, six paired normal and cancerous oral cancer tissues were examined. As expected, miR-196a and miR-196b were significantly over-expressed in all cancer tissues (Figure 5C). Consistent with these cellular findings, the NME4 target molecule was substantially suppressed, and an elevation of phosphorylated JNK and MMP9 protein expression was observed (Figures 5D). These results confirmed that the dysregulation pathway of miR-196-NME4-pJNK-MMP molecular axis occurring in oral cancer patients.
To determine the potential association between cancer status and miR-196 expression, Pearson’s chi-squared test was used for statistical analysis. The associations of miR-196 expression with cancer stage and pathological status are shown in Table 1. There was no significant correlation of miR-196 expression with the pathological T stage, overall stage, differentiation status, alcohol consumption, cigarette smoking, or betel quid chewing. However, a significant correlation was found between high miR-196 levels and the pathological N stage (P = 0.001 and P = 0.006 for miR-196a and miR-196b, respectively). These results indicate the clinical significance of the miR-196 molecules in oral cancer.
The dysregulation of miRNAs is associated with malignant transformation. Previously, miR-196 expression was shown to be altered in several cancers. Although some investigators have reported decreased miR-196 expression in cancers, others have observed increased miR-196 expression. For example, miR-196a and miR-196b are down-regulated (or function as tumor suppressors) in melanoma and acute lymphoblastic leukemia[17, 19]. However, miR-196a and miR-196b over-expression has been observed in several malignant diseases, including cancers of the esophagus, pancreas, colorectum, glioblastoma, and several types of leukemia[13, 18, 32]. High miR-196a levels have also been associated with a poor prognosis in pancreatic cancer, glioblastoma, and oral squamous cell carcinoma. Furthermore, the polymorphism of pre-miR-196a2 gene was observed in several malignant diseases, including head and neck cancer, and has been associated with cancer susceptibility or prognosis[33–37]. These studies indicate that miR-196 dysregulation plays an important role in carcinogenesis. Consistent with other reports, we previously observed miR-196 overexpression in oral cancer cell lines. In that study, we further identified miR-196 overexpression in the cancer tissues of approximately 90% of patients with oral cancer compared to their expression in normal tissue (Figure 5), and this overexpression was associated with an aggressive phenotype with lymph node invasion (Table 1). These results demonstrate the significance of miR-196 in the development of oral cancer.
There are limited reports on the role of miR-196 in cancer development. In a study of breast cancer, ectopic miR-196a expression suppressed cell invasion, but the expression level of miR-196 was not correlated with the clinical metastatic status. This result is different from the findings in gastrointestinal cancers, in which miR-196 overexpression promotes cell migration and invasion in colorectal and gastric cancer cells[12, 38, 39]. In another study, transfection of miR-196a mimic oligonucleotides into esophagus cells revealed that miR-196a promoted cell proliferation and suppressed apoptosis. Thus far, the function of miR-196 in cancer remains obscure. In this study, we determined the role of miR-196 in oral cancer using both silencing and overexpression approaches. We found that both miR-196a and miR-196b actively promoted cell migration and invasion (Figures 1B-C), which were supported by the altered expression of fibronectin and N-cadherin (Figures 1D). However, neither miR-196a nor miR-196b affected cell growth and colony formation (Additional file2: Figure S1). Hence, the main function of the miR-196 family in oral cancer is the regulation of cell mobility and invasiveness.
Identification of the target molecules of these miRNAs is of high interest. Previously, several molecules were reported as regulatory targets of miR-196. HOX family members have been reported primarily, including HOX-B7 (miR-196a target) in melanoma, HOX-A (miR-196b target) in acute lymphoblastic leukemia, and HOX-C8 (miR-196 family target) in melanoma and breast cancer. In this study, four HOX family genes (HOXA5, HOXB6, HOXB7, HOXC8) were identified as targets of miR-196. However, none of these genes responded to miR-196 perturbation (Additional file2: Figure S4). This difference may be due to the distinct tissue specificity among the various regulatory targets of miR-196. In this study, after clarifying the correlation between NME4 and miR-196 expression in cells (Figures 2A-C), assessing the response of NME4 to miR-196 modulation (Figures 2D), we identified NME4 as a direct target of miR-196a and miR-196b in oral cancer using a luciferase reporter assay (Figure 2E),
NME4, also named nm23-H4, is a member of the nm23 family. The proteins in this family possess nucleoside diphosphate kinase activity, which is believed to be involved in DNA repair mechanisms. Nm23 family proteins also contain the RGD domain, as they can bind to integrin, and this family has been postulated to be involved in cell adhesion and migration. Thus far, only a few studies assessed the association of NME4 with cancer, but genomic aberration or altered gene expression has been observed for NME4 in several types of cancers[44–47]. Although the function of NME4 is unclear, it was reported that an nm23 family member, NEM1, is regulated by TP53 and that it acts as a metastatic suppressor. In this study, we also found that ectopic expression of NME4 has no significant effect on cell invasion and migration (Figures 3B-C), indicating that a certain level of NME4 protein is sufficient for maintaining cellular mobility. However, restoration of silenced NME4 suppressed these effects induced by miR-196 (Figures 3B-C), suggesting that NME4 participates in the miR-196 regulatory pathway by inhibiting these functions. Collectively, miR-196 plays an oncogenic role by degrading NME4, thus accelerating cell migration and invasion.
The downstream regulatory mechanism of the miR-196–NME4 interaction was further investigated. In examining three MAPK family molecules, we found that p-JNK, but not p-Erk or p-p38, responded to miR-196 expression and NME4 inhibition, whereas miR-196 and NME4 had minimal effects on the expression of MAPK proteins (Figure 4A). These results indicate that miR-196–NME4 signaling could result in JNK phosphorylation and activation. In addition, TIMP1 and MMP1/9 displayed opposite responses to miR-196 suppression and NME4 augmentation (Figure 4A). These results suggest that TIMP1 and MMP1/9 are the downstream regulatory molecules of the miR-196–NME4 signaling axis. Additionally, we found that p-JNK inhibition increased TIMP1 expression and decreased MMP1/9 expression (Additional file2: Figure S5). Hence, TIMP1 and MMP1/9 could be regulated by JNK phosphorylation. Moreover, the role of the NME4-pJNK-TIMP1-MMP1/9 signaling pathway in miR-196 function was further demonstrated by immunofluorescence staining and confocal microscopy (Figure 4B). Furthermore, this molecular pathway was also confirmed in another oral cell line (SAS) (Additional file2: Figure S6) and paired normal and cancerous oral cancer tissues (Figure 5D). Thus, miR-196 appear to fine-tune the invasion mechanism in oral cancer by inhibiting NME4, leading to the activation of p-JNK and MMP1/9 and suppression of TIMP1 (Figure 4C).
In conclusion, we clarified that miR-196 promotes invasive and migratory phenotypes in oral cancer. Mechanistically, miR-196 exerted its functions by targeting to NME4, leading to the regulation of downstream molecules, including activating p-JNK, suppressing TIMP1, and augmenting MMP1/9. Consistently, clinical studies have revealed that both miR-196a and miR-196b are remarkably up-regulated in cancer tissue and correlated with lymph node metastasis. Thus, our findings provide new knowledge of the underlying mechanism of cancer metastasis. miR-196 may serve as a promising marker for better oral cancer management.
This work was supported by grants from Chang Gung Memorial Hospital (CMRPG300062, CMRPG3A0891, CMRPD190394), and National Science Counsel (NSC-101-2320-B- 182-041-MY3).
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