Yamori T: Panel of human cancer cell lines provides valuable database for drug discovery and bioinformatics. Cancer Chemother Pharmacol. 2003, 52 (Suppl 1): S74-9. 10.1007/s00280-003-0649-1
Article
CAS
PubMed
Google Scholar
Kim JB, Stein R, O'Hare MJ: Three-dimensional in vitro tissue culture models of breast cancer – a review. Breast Cancer Res Treat. 2004, 85 (3): 281-91. 10.1023/B:BREA.0000025418.88785.2b
Article
PubMed
Google Scholar
Price JE, Zhang RD: Studies of human breast cancer metastasis using nude mice. Cancer Metastasis Rev. 1990, 8: 285-297. 10.1007/BF00052605
Article
CAS
PubMed
Google Scholar
Ross DT, Perou CM: A comparison of gene expression signatures from breast tumors and breast tissue derived cell lines. Dis Markers. 2001, 17 (2): 99-109.
Article
PubMed Central
CAS
PubMed
Google Scholar
Stein WD, Litman T, Fojo T, Bates SE: A Serial Analysis of Gene Expression (SAGE) database analysis of chemosensitivity: comparing solid tumors with cell lines and comparing solid tumors from different tissue origins. Cancer Res. 2004, 64 (8): 2805-16. 10.1158/0008-5472.CAN-03-3383
Article
CAS
PubMed
Google Scholar
Sandberg R, Ernberg I: Assessment of tumor characteristic gene expression in cell lines using a tissue similarity index (TSI). Proc Natl Acad Sci USA. 2005, 102 (6): 2052-2057. 10.1073/pnas.0408105102
Article
PubMed Central
CAS
PubMed
Google Scholar
Sandberg R, Ernberg I: The molecular portrait of in vitro growth by meta-analysis of gene-expression profiles. Genome Biol. 2005, 6 (8): R65- 10.1186/gb-2005-6-8-r65
Article
PubMed Central
PubMed
Google Scholar
Kanehisa M: A database for post-genome analysis. Trends Genet. 1997, 13: 375-376. 10.1016/S0168-9525(97)01223-7
Article
CAS
PubMed
Google Scholar
Kanehisa M, Goto S: KEGG: Kyoto Encyclopedia of Genes and Genomes. Nucleic Acids Res. 2000, 28: 27-30. 10.1093/nar/28.1.27
Article
PubMed Central
CAS
PubMed
Google Scholar
Staunton JE, Slonim DK, Coller HA, Tamayo P, Angelo MJ, Park J, Scherf U, Lee JK, Reinhold WO, Weinstein JN, Mesirov JP, Lander ES, Golub TR: Chemosensitivity prediction by transcriptional profiling. Proc Natl Acad Sci USA. 2001, 98 (19): 10787-92. 10.1073/pnas.191368598
Article
PubMed Central
CAS
PubMed
Google Scholar
Ramaswamy S, Tamayo P, Rifkin R, Mukherjee S, Yeang CH, Angelo M, Ladd C, Reich M, Latulippe E, Mesirov JP, Poggio T, Gerald W, Loda M, Lander ES, Golub TR: Multiclass cancer diagnosis using tumor gene expression signatures. Proc Natl Acad Sci USA. 2001, 98 (26): 15149-54. 10.1073/pnas.211566398
Article
PubMed Central
CAS
PubMed
Google Scholar
Zhang B, Kirov S, Snoddy J: WebGestalt: an integrated system for exploring gene sets in various biological contexts. Nucleic Acids Res. 2005, 33: W741-8. 10.1093/nar/gki475
Article
PubMed Central
CAS
PubMed
Google Scholar
Irizarry RA, Hobbs B, Collin F, Beazer-Barclay YD, Antonellis KJ, Scherf U, Speed TP: Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics. 2003, 4 (2): 249-64. 10.1093/biostatistics/4.2.249
Article
PubMed
Google Scholar
Bolstad BM, Irizarry RA, Astrand M, Speed TP: A Comparison of Normalization Methods for High Density Oligonucleotide Array Data Based on Bias and Variance. Bioinformatics. 2003, 19 (2): 185-193. Supplemental information, 10.1093/bioinformatics/19.2.185
Article
CAS
PubMed
Google Scholar
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JY, Zhang J: Bioconductor: open software development for computational biology and bioinformatics. Genome Biol. 2004, 5 (10): R80- 10.1186/gb-2004-5-10-r80
Article
PubMed Central
PubMed
Google Scholar
Ihaka R, Gentleman R: R: A Language for Data Analysis and Graphics. Journal of Computational and Graphical Statistics. 1996, 3 (5): 299-314. 10.2307/1390807. 10.2307/1390807
Google Scholar
Bioconductor for R Installation Script. [http://www.bioconductor.org/getBioC.R]
Tusher VG, Tibshirani R, Chu G: Significance analysis of microarrays applied to the ionizing radiation response. Proc Natl Acad Sci USA. 2001, 98: 5116-5121. 10.1073/pnas.091062498
Article
PubMed Central
CAS
PubMed
Google Scholar
Saeed AI, Sharov V, White J, Li J, Liang W, Bhagabati N, Braisted J, Klapa M, Currier T, Thiagarajan M: TM4: a free, open-source system for microarray data management and analysis. Biotechniques. 2003, 34: 374-378.
CAS
PubMed
Google Scholar
Segal E, Friedman N, Koller D, Regev A: A module map showing conditional activity of expression modules in cancer. Nat Genet. 2004, 36 (10): 1090-8.
Article
CAS
PubMed
Google Scholar
Segal E, Friedman N, Kaminski N, Regev A, Koller D: From signatures to models: understanding cancer using microarrays. Nat Genet. 2005, S38-45. 37 Suppl.
Chevrollier A, Loiseau D, Gautier F, Malthiery Y, Stepien G: ANT2 expression under hypoxic conditions produces opposite cell-cycle behavior in 143B and HepG2 cancer cells. Mol Carcinog. 2005, 42 (1): 1-8. 10.1002/mc.20059
Article
CAS
PubMed
Google Scholar
A predicted increase in the velocity of RNA and DNA base production in cell lines is in line with trend of increasing rates of cell division observed in cell cultures.
Kufe Donald W, Pollock Raphael E, Weichselbaum Ralph R, Bast Robert C, Gansler Ted S, Holland James F, Frei Emil : Pyrimidine and Purine Antimetabolites. Cancer Medicine Inc. Edited by: Decker BC. 2003, 50-6.
Google Scholar
Vogel TW, Zhuang Z, Li J, Okamoto H, Furuta M, Lee YS, Zeng W, Oldfield EH, Vortmeyer AO, Weil RJ: Proteins and protein pattern differences between glioma cell lines and glioblastoma multiforme. Clin Cancer Res. 2005, 11 (10): 3624-32. 10.1158/1078-0432.CCR-04-2115
Article
CAS
PubMed
Google Scholar
Dipasquale B, Colombatti M, Tridente G: Morphological heterogeneity and phenotype modifications during long term in vitro cultures of six new glioblastoma cell lines. Tumori. 1990, 76 (2): 172-8.
CAS
PubMed
Google Scholar
Chen MH, Yang WK, Whang-Peng J, Lee LS, Huang TS: Differential inducibilities of GFAP expression, cytostasis and apoptosis in primary cultures of human astrocytic tumours. Apoptosis. 1998, 3: 171-82. 10.1023/A:1009698822305
Article
CAS
PubMed
Google Scholar
Pandita A, Aldape KD, Zadeh G, Guha A, James CD: Contrasting in vivo and in vitro fates of glioblastoma cell subpopulations with amplified EGFR. Genes Chromosomes Cancer. 2004, 39: 29-33. 10.1002/gcc.10300
Article
CAS
PubMed
Google Scholar
Pieper RO: Defined human cellular systems in the study of glioma development. Front Biosci. 2003, 8: s19-27.
Article
CAS
PubMed
Google Scholar
Faure Vigny H, Heddi A, Giraud S, Chautard D, Stepien G: Expression of oxidative phosphorylation genes in renal tumors and tumoral cell lines. Mol Carcinog. 1996, 16 (3): 165-72. 10.1002/(SICI)1098-2744(199607)16:3<165::AID-MC7>3.0.CO;2-G
Article
CAS
PubMed
Google Scholar
Franks SE, Kuesel AC, Lutz NW, Hull WE: 31P MRS of human tumor cells: effects of culture media and conditions on phospholipid metabolite concentrations. Anticancer Res. 1996, 16 (3B): 1365-74.
CAS
PubMed
Google Scholar