Regulation of the Aurora-A gene following topoisomerase I inhibition: implication of the Myc transcription Factor
- Sandy Courapied†1,
- Julia Cherier†1,
- Arnaud Vigneron1,
- Marie-Bérangère Troadec3,
- Sandrine Giraud4,
- Isabelle Valo2,
- Claude Prigent3,
- Erick Gamelin1,
- Olivier Coqueret†1Email author and
- Benjamin Barré†1Email author
© Courapied et al; licensee BioMed Central Ltd. 2010
Received: 16 March 2010
Accepted: 3 August 2010
Published: 3 August 2010
During the G2 phase of the cell cycle, the Aurora-A kinase plays an important role in centrosome maturation and progression to mitosis. In this study, we show in colorectal cell lines that Aurora-A expression is downregulated in response to topoisomerase I inhibition. Using chromatin immunoprecipitation assays, we have observed that the Myc transcription factor and its Max binding partner are associated with the Aurora-A promoter during the G2 phase of the cell cycle. RNA interference experiments indicated that Myc is involved in the regulation of the Aurora-A gene. Following topoisomerase I inhibition, the expression of Myc decreased whereas Mad was upregulated, and the association of Myc and Max with the promoter of the kinase was inhibited. In parallel, an increased association of Mad and Miz-1 was detected on DNA, associated with an inhibition of the recruitment of transcriptional coactivators. Interestingly, a gain of H3K9 trimethylation and HP1γ recruitment was observed on the Aurora-A promoter following sn38 treatment, suggesting that this promoter is located within SAHF foci following genotoxic treatment. Since Aurora-A is involved in centrosome maturation, we observed as expected that topoisomerase I inhibition prevented centrosome separation but did not affect their duplication. As a consequence, this led to G2 arrest and senescence induction.
These results suggest a model by which the Aurora-A gene is inactivated by the G2 checkpoint following topoisomerase I inhibition. We therefore propose the hypothesis that the coordinated overexpression of Myc and Aurora-A, together with a downregulation of Mad and Miz-1 should be tested as a prognosis signature of poor responses to topoisomerase I inhibitors.
The response to genotoxic treatments relies to a large extent on the activation of the ATM and ATR kinases and on the consequent upregulation of chk1 and chk2 signaling [1–3]. Among numerous substrates, this signaling network leads to the activation and stabilization of the p53 pathway which induces apoptosis or cell cycle arrest . In addition to this protective pathway, others checkpoints are also involved in the control of the progression towards mitosis. At the G1/S transition, chk1/2 activation promotes the degradation of cdc25A by the SCFβTCRP complex, leading to cdk2 inactivation and G1 phase arrest . During G2 and mitosis, the inhibition of cdc25C by chk1/2 induces the inactivation of cyclin B-cdk1 complexes [6, 7], whereas the BubR1, Mad1 or Mad2 proteins can prevent anaphase following spindle checkpoint activation .
In association with the cyclin B-cdk1 complexes and cdc25C, the Aurora-A serine/threonine kinase is also essential for progression to mitosis [9, 10]. This protein localizes in early G2 to duplicated centrosomes where it plays an important role in their maturation, separation and in the consequent assembly of the spindle apparatus. Illustrating its essential role in spindle organization, the inactivation of Aurora-A leads to the generation of spindle defects, mitotic catastrophe and aneuploidy [10, 11]. Importantly, a high expression of the kinase, often due to gene amplification at 20q13, has been detected in several epithelial tumors such as breast, ovarian, gastric, pancreatic and colorectal cancers . In addition, the overexpression of Aurora-A transforms NIH3T3 fibroblasts, probably as a consequence of abnormal mitosis and inactivation of the p53 tumor suppressor gene . An abnormal expression of this kinase is therefore believed to play an important role in cell transformation and genetic instability.
Despite recent studies , the regulation of Aurora-A during DNA damage remains most of the time to be characterized. In this study, we show that topoisomerase I inhibitors, one the main drug used in the treatment of colorectal cancers [14, 15], induced a downregulation of Aurora-A expression and prevented centrosome separation. In normal conditions, we found that the Myc transcription factor binds to the promoter of this gene in association with Max. Following topoisomerase I inhibition, Myc/Max binding is inhibited, Mad and Miz-1 associate with this promoter and this is associated with transcriptional downregulation.
Altogether, these results indicate that Aurora-A is downregulated in response to topoisomerase I inhibition. We propose that this inhibition plays an important role during the G2 checkpoint in parallel to p53 induction and cdc25C inactivation.
Polyclonal anti-phospho p53 (SC-11764-R), anti-c-myc (SC-764), anti-p21waf1 (SC-397), monoclonal anti-p53 (SC-98), anti-max (C17) (SC-197), anti-mad1 (C19) (SC-222), anti-CBP (A22) (SC369), anti-RNA polymerase II (N20) (SC899), anti-HP1 (S-19) and anti-miz1 (H190) (SC-22837) were obtained from Santa Cruz Biotechnology (Santa Cruz). Monoclonal anti-α and γ-tubulin were obtained from Sigma, anti-H3K9me3 (07-442) and anti-H3-Ac (06-599) were from Upstate. All statistical analysis have been performed with the Graphpad software.
Total RNA was isolated from cell lines with TRIzol reagent (Invitrogen) and expression was measured by real time PCR analysis using GADPH or RPLPO as a normalization standards. The following primers were used:
Aurora A: For 5'-GATCAGCTGGAGAGCTTAAA-3', Rev 5'-GAGGCTTCCCAACTAAAAAT-3'; c-Myc: For 5'-ATTCTCTGCTCTCCTCGAC-3', Rev 5'-GTAGTTGTGCTGATGTGTGG-3'; Max: For 5'-ACGAAAACGTGGGACCACATC-3', Rev 5'-GTGTGTGGTTTTTCCCGCATAT-3'; Mad: For 5'-GGTTCGGATGAACATCCAG-3', Rev 5'-GGCATCTCTGTCCTTGTTATTGT-3'; Miz-1: For 5'-GGCAAACTGTCAGAAAAGAGTAGC-3', Rev 5'-CGCTGCTGGTTCAGCTGTT-3'; p21WAF1: For 5'-GCTCCTTCCCATCGCTGTCA-3' Rev 5'-TCACCCTGCCCAACCTTAGA-3'; GAPDH: For 5'-GAAGGTGAAGGTCGGAGTC-3', Rev 5'-GAAGATGGTGATGGGATTTC-3; 3' RPLPO: For 5'-AACCCAGCTCTGGAGAAACT-3' and Rev 5'-CCCCTGGAGATTTTAGTGGT-3'
Cell lines and treatment
The human colorectal cell lines HT29 (HTB-38) and HCT116 (CCL-247) (ATCC, Manassas, VA20108, USA) were cultured in RPMI 1640 medium (Lonza Walkersville, USA). Cell lines were supplemented with 10% fetal bovine serum (PAA laboratories GmbH, Austria). Cells grown in 3% FBS medium were immediately treated with sn38 (5 ng/ml, 12.5 nM) for 48 h. Note that this treatment should be done before complete cell adhesion so that every cell can incorporate the drug before entering the next S phase. To choose this concentration, clonogenic assays were performed to determine the concentration that kill all cells after 10 days. For HCT116 cells, 5 ng/ml induced 100% mortality.
Chromatin Immunoprecipitation Assay (ChIP)
Cells, grown to 60% confluence, were treated or not as indicated and then washed and cross-linked with 1% formaldehyde at room temperature for 8 min essentially as previously described [16, 17]. Reaction was stopped with 10 ml of 125 mM glycin solution. Cells were washed with cold PBS and lysed in 500 μl of lysis buffer (1% SDS, 10 mM EDTA, 50 mM Tris-HCl pH 8.1, 1 mM PMSF, 5 mM NaF, 5 mM Na3VO4, 2 μg/ml leupeptin, 5 μg/ml aprotinin, 1 μg/ml pestatin), and sonicated five times for 20 secondes each. Supernatants were then recovered by centrifugation at 12 000 rpm for 10 min at 4°C, diluted once in dilution buffer (1% Triton X-100, 2 mM EDTA, 150 mM NaCl, 20 mM Tris-HCl pH 8.1) and subjected to one round of immunoclearing for 2 h at 4°C with 2 μg of sheared salmon-sperm DNA, and 20 μl of proteinG-agarose coated with salmon sperm DNA (Millipore) (of 50% slurry). Immunoprecipitation was performed overnight with specific antibodies and IgG control, and then 2 μg of sheared salmon-sperm DNA and 20 μl of proteinG-agarose coated with salmon sperm DNA (Millipore) (of 50% slurry) were further added for 1 h at 4°C. Note that immunoprecipitations were performed in the presence of 0,1% Igepal CA-630. Immunoprecipitates were washed sequentially for 10 min each in TSE I (0.1% SDS, 1% Triton X-100, 2 mM EDTA, 20 mM Tris-HCl pH 8.1, 150 mM NaCl), TSE II (0.1% SDS, 1% Triton X-100, 2 mM EDTA, 20 mM Tris-HCl pH 8.1, 500 mM NaCl), and Buffer 3 (250 mM LiCl, 1% NP-40, 1% deoxycholate, 1 mM EDTA, 10 mM Tris-HCl pH 8.1). Beads precipitates were then washed once with TE buffer and eluted once with 1% SDS, 100 mM NaHCO3. For Re-ChIP experiments 25 μl of ReChIP buffer (Dilution Buffer, 10 mM DTT) was added to beads following washes and incubated at 37°C for 30 minutes. The sample was then diluted 40 times in dilution buffer and immunoprecipitations, washes and elution were performed as before (). Eluates were heated at 65°C for 6 hours to reverse the formaldehyde cross-linking. DNA was precipitated using classical procedures. Real-time PCR was used for ChIP analysis and quantification. The ChIP have been calculated as binding to region of interest/IgG control, divided by binding to negative control region/IgG control. The following primers were used:
region -668/-400 of the Aurora A promoter: For 5'-GAT GCCCCCTCACTATATGC-3', Rev 5'-AGGAGAGAGCGGGATACCAA-3'; region -114/+161 of the Aurora A promoter: For 5'-AGGTCTGGCTGGCCGTTG-3', Rev 5'-CCTCGTCCGCCACTGAGATAT-3' Control region -1701/-1399 of the Aurora A promoter For 5'-ACTCCAGATCCCTCAGCTTAACCA-3' Rev 5'-CAAGTTATGGGACGGTGAACG-3'
Transient transfections, siRNA knockdown, RNA extraction, semi-quantitative and quantitative reverse transcription-polymerase chain reaction, protein extracts and western blots were all performed as described previously [17, 19]. All experiments were performed a minimum of three times before calculating means and standard deviations as shown in figures.
Topoisomerase I inhibition induced a downregulation of Aurora-A expression
Altogether, these results indicate that topoisomerase I inhibitors such as sn38 induced a downregulation of Aurora-A expression.
Myc binds to the promoter of the Aurora gene and is involved in its regulation
Following sn38 treatment, we observed as expected in HCT116 cells that p53 was stabilized and phosphorylated on its serine 15 residue. Consequently, p21waf1 level was also enhanced in response to drug treatment (Figure 2A, lanes 1-4). To check whether Aurora-A downregulation was dependent on the p53-p21 pathway [20, 21], we used the HCT116 p21-/- derivative cell line in which both p21waf1 alleles have been deleted by homologous recombination . Results showed that sn38 reduced Aurora-A expression in HCT116 p21-/- cells (Figure 2B, lanes 1-4). The same effect was observed in the HT29 cell line that contains a mutated form of p53 (Figure 2B, lanes 5-6). These results indicate that Aurora-A downregulation is not cell-type specific and is independent of the p53-p21 pathway.
During the course of this study, we noticed that the expression of the c-Myc transcription factor was significantly reduced following topoisomerase I inhibition (Figure 2C, lanes 1-4). This suggested that c-Myc was involved in the regulation of the Aurora-A gene. To verify this hypothesis, we used doxycyclin-inducible expression vectors that stably drives the expression of two different Myc siRNAs in two different clones of the LS174T colorectal cell line. As previously shown , western blot analysis showed that doxycyclin induced a significant downregulation of c-Myc levels in the two clones (Figure 2D, lanes 4 and 6, top panel). Interestingly, we observed under these conditions that Aurora-A expression was inhibited upon c-Myc knockdown (Figure 2D, compare lanes 4 and 6 with lanes 3 and 5, middle panel). Note that c-Myc downregulation did not modify cell cycle distribution in the G2 phase of the cell cycle (data not shown) so that Aurora-A inhibition can not be explained by G0/G1 arrest.
Myc is a basic helix-loop-helix zipper transcription factor that heterodimerizes with Max to activate gene transcription. Its activity is inhibited by Mad which associates with Max to recruit repressor complexes to promoters . To determine if Myc and Max are associated with the Aurora-A promoter and if this association is cell cycle dependent, HCT116 cells were synchronized in G1/S with hydroxyurea, washed and then grown again in serum for 5 hr (S/early G2), 9 hr (G2) and 13 hr (next G1). ChIP experiments were then performed as described above. Results presented Figure 3C, lanes 3 and 7, indicate that the two proteins are effectively recruited to this promoter in the G2 phase of the cell cycle. To determine if the two proteins are associated on DNA, a serial ChIP experiment (Re-ChIP) was then performed. For this, the soluble chromatin was immunoprecipitated with Myc antibodies, the immune complexes were released with DTT and the chromatin was further divided into two aliquots and reimmunoprecipitated with IgG or Max antibodies. Under these conditions, subsequent Re-IPs with Max antibodies were able to immunoprecipitate the Aurora-A promoter whereas this was not the case with the control antibody (Figure 3D). Importantly, the association of the two proteins was only detected during the G2 phase of the cell cycle. ChIP result have been obtained by semi-quantitative PCR (Figure 3D, lanes 1-4) and quantified by quantitative-PCR (Figure 3E). As a control, the PCR analysis did not detect any occupancy of a control DNA region (Figure 3D, lanes 5-8) or of the proxymal promoter during the G1 phase of the cell cycle and at the G1/S transition (Figure 3D, lane 4 and 1).
We concluded from these results that the Myc/Max complex binds to the promoter of the Aurora A gene during the G2 phase of the cell cycle and that Myc is involved in the regulation of this gene.
Topoisomerase I inhibition prevents the association of the Myc-Max complex with the Aurora-A promoter
Altogether, we concluded from these results that the Myc/Max complex binds to the promoter of the Aurora-A gene in the G2 phase of the cell cycle and that this binding is inhibited upon topoisomerase I inhibition.
Topoisomerase I inhibition promotes Miz-1 recruitment to the Aurora-A promoter
Altogether, we concluded from these results that topoisomerase I inhibition induces a recruitment of Miz-1 to the Aurora-A promoter and decreases the binding of transcriptional coactivators.
The Aurora-A promoter is located within SAHF foci following topoisomerase I inhibition
In light of these results, we concluded that the Aurora-A proxymal promoter is located within SAHF foci following genotoxic treatment and that its inhibition is probably related to the recruitment of cofactors involved in transcriptional silencing such as HP1γ and to the tri-methylation of H3K9.
Topoisomerase I inhibition prevents centrosome separation
Thus, we concluded from these results that topoisomerase I inhibition prevents centrosome separation, probably as a consequence of Aurora-A inhibition, and that this leads to G2 arrest and senescence induction.
In this study, we have shown that the Aurora-A gene is inhibited upon topoisomerase I inhibition. In normal conditions, the Myc transcription factor is recruited to the promoter of the Aurora-A gene in association with its binding partner Max. Following topoisomerase I inhibition, Mad proteins increase, the association of Myc and Max with the Aurora-A promoter is inhibited, the Mad and Miz-1 proteins are recruited to DNA and this is followed by transcriptional downregulation. Probably as a consequence of the downregulation of the Myc-Aurora A pathway, genotoxic treatment also prevented centrosome separation. In light of these results, we propose that the downregulation of the Aurora-A gene is one of the essential events of G2 arrest occurring in response to topoisomerase I inhibition.
Gene transcription is regulated at multiple steps including DNA binding of transcription factors, recruitment of the basal transcriptional apparatus and elongation of mRNA synthesis. Activation is also affected by several complexes that affect nucleosomal structure  such as histone acetyltransferase (HATs) proteins and chromatin remodeling complexes. In light of our results, we speculate that Myc is associated with Max on the Aurora-A promoter to allow the recruitment of transcriptional coactivators previously shown to be associated with Myc, such as TRAPP, a subunit of the TIP60 histone acetylase complex, or TIP48 and TIP49, two ATPases involved in chromatin remodeling . In addition, Myc can also regulate the elongation program through its association with the P-TEFb complex and cdk9 [32, 33]. It will be interesting to determine if Myc regulates the elongation process on the Aurora-A gene as previously reported on the cad promoter [32, 33], or if its effects rely on the recruitment of histone acetylases and chromatin remodeling complexes. We have previously shown that topoisomerase I inhibition induced senescence in colorectal cancers . It has been proposed that this program is associated with chromatin reorganization of proliferation genes into senescence-associated heterochromatin foci (SAHFs) . Silencing depends on the retinoblastoma pathway and is associated with enhanced histone H3 tri-methylation and recruitment of the HP1 protein on proliferative genes. Interestingly, we have effectively observed that SAHFs are present in colorectal cancer cells treated with sn38 and that topoisomerase I inhibition is associated with the recruitment of HP1γ and trimethylation of H3K9me3 on the Aurora-A promoter. Since Miz-1 interacts with transcriptional repressors such as Gfi-1, Dnmt3a or BCL6 to downregulate gene transcription [25, 26, 34, 35], a Miz repressor complex could inactivate the Aurora-A promoter by initiating SAHFs formation on this gene. Since SAHFs formation has been initially described to be associated with transcriptional silencing induced by the Rb protein, our results also suggest that this gene might be a target of this suppressor pathway. Note however that we have not been able to detect the expression of the p16INK4 protein in our conditions. Thus, if the Aurora-A promoter is regulated by the Rb protein following sn38 treatment, this does probably not rely on p16INK4.
Following DNA damage, the ATM/ATR/chk pathway is activated to induce the upregulation of the p53 tumor suppressor and the consequent activation of the p21waf1 gene. In parallel, the cdc25 phosphatases are inactivated, leading to cdk inhibition and cell cycle arrest. Using colorectal cancer cell lines, we show that the Aurora-A gene is also downregulated following topoisomerase I inhibition and that this effect is probably related to a decreased recruitment of the Myc transcription factor to its promoter. We propose the hypothesis that tumors expressing high levels of the Myc-Aurora-A pathway might be resistant to topoisomerase I inhibitors.
This work was supported by a fellowship (to A.V and S.C) and a grant from Institut National du Cancer and from the Ligue contre le Cancer (Equipes labélisées 2007 to O.C, C.P and E.G), a grant from Canceropole Grand Ouest (O.C, C.P and E.G.) and a fellowship from INSERM-Region and Rotary (to J.C).
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