Long noncoding RNA PVT1 indicates a poor prognosis of gastric cancer and promotes cell proliferation through epigenetically regulating p15 and p16
- Rong Kong†1, 2,
- Er-bao Zhang†2,
- Dan-dan Yin†3,
- Liang-hui You4,
- Tong-peng Xu5,
- Wen-ming Chen5,
- Rui Xia2,
- Li Wan6,
- Ming Sun2,
- Zhao-xia Wang6Email author,
- Wei De2Email author and
- Zhi-hong Zhang7Email author
© Kong et al.; licensee BioMed Central. 2015
Received: 11 October 2014
Accepted: 31 March 2015
Published: 12 April 2015
Mounting evidence indicates that long noncoding RNAs (lncRNAs) could play a pivotal role in cancer biology. However, the overall biological role and clinical significance of PVT1 in gastric carcinogenesis remains largely unknown.
Expression of PVT1 was analyzed in 80 GC tissues and cell lines by qRT-PCR. The effect of PVT1 on proliferation was evaluated by MTT and colony formation assays, and cell apoptosis was evaluated by Flow-cytometric analysis. GC cells transfected with shPVT1 were injected into nude mice to study the effect of PVT1 on tumorigenesis in vivo. RIP was performed to confirm the interaction between PVT1 and EZH2. ChIP was used to study the promoter region of related genes.
The higher expression of PVT1 was significantly correlated with deeper invasion depth and advanced TNM stage. Multivariate analyses revealed that PVT1 expression served as an independent predictor for overall survival (p = 0.031). Further experiments demonstrated that PVT1 knockdown significantly inhibited the proliferation both in vitro and in vivo. Importantly, we also showed that PVT1 played a key role in G1 arrest. Moreover, we further confirmed that PVT1 was associated with enhancer of zeste homolog 2 (EZH2) and that this association was required for the repression of p15 and p16. To our knowledge, this is the first report showed that the role and the mechanism of PVT1 in the progression of gastric cancer.
Together, these results suggest that lncRNA PVT1 may serve as a candidate prognostic biomarker and target for new therapies in human gastric cancer.
Gastric cancer (GC) is the second leading cause of cancer death and the most common gastrointestinal malignancy in East Asia . Unfortunately, gastric cancer is often diagnosed at advanced stage in most patients and the prognosis is still very poor . Despite efforts in multiple fields, there has been little improvement in early diagnosis and treatment of gastric cancer. Thus, a better understanding of the mechanisms underlying GC development and progression is essential for improving prevention, diagnosis and treatment of this disease.
Recent advances in whole-genome sequencing technology have led to the discovery of a new type of regulation gene, i.e. long noncoding RNAs (lncRNAs), which are more than 200 bases in length and unable to be translated into proteins. Emerging evidence suggests that lncRNAs may play critical roles in cellular development, differentiation, and many other biological processes [3-5]. The dysregulation of lncRNAs has been shown in various types of cancer including gastric cancer [6-9]. Molecular mechanisms of lncRNAs are diverse. They have been shown to regulate gene expression at multiple levels, including chromatin modification, transcription and post-transcriptional processing. For example, lncRNAs regulate gene transcription through recruiting transcription factors to their target gene promoters, therefore activating gene expression . Moreover, they can also block binding of transcription factors, potentially via formation of RNA-DNA-Triplexes . In mammalian cells, lncRNA HOTAIR interacts with PRC2 (Polycomb Repressive Complex 2) to induce heterochromatin formation in specific gene loci leading to inactivation of target genes . Furthermore, lncRNAs can modulate gene expression in post-transcriptionally levels [13-15].
Increasing amount of evidence suggests that numerous lncRNAs have been identified to regulate gene expression through binding to PRC2 in various biological processes, especially in cancer [16,17]. PRC2 is involved in many biological processes, including differentiation, maintaining cell identity and proliferation, and stem-cell plasticity . EZH2, a key catalytic subunit of PRC2 (EZH2, SUZ12 and EED), functions as a histone methyltransferase that specifically induces histone H3 lysine 27 trimethylation (H3K27me3) to target genes . Overexpression of EZH2 is a marker of advanced and metastatic disease in numerous cancers, including bladder cancer , gastric cancer , lung cancer , cervical cancer  and hepatocellular carcinoma . So far, long non-coding RNAs are becoming recognized as important participants in PRC2 function.
PVT1 oncogene (PVT1) encodes a long noncoding RNA and maps to chromosome 8q24 . Alvarez ML et al. has showed that PVT1 may mediate the development and progression of diabetic nephropathy through mechanisms involving ECM accumulation . Amplification of PVT1 is one of the most frequent events in a variety of malignant diseases, including colorectal cancer , serous ovarian and breast cancers , and has been associated with reduced survival duration in patients. To sum up, the dysregulation of PVT1 involves in a wide variety of diseases, especially in tumors. However, the function role and molecular mechanism of PVT1 in gastric cancer remains unclear.
In the current study, we showed that PVT1 was markedly increased in gastric cancer tissues compared with adjacent non-tumor tissues and could be served as an independent predictor for overall survival in gastric cancer. In addition, PVT1 could regulate gastric cancer cell growth both in vitro and in vivo. Furthermore, PVT1 played a pivotal role in G1 arrest through epigenetically regulating the expression of p15 and p16 by binding to EZH2. Together, these results indicate that lncRNA PVT1 plays a critical role in gastric cancer and may serve as a candidate target for new therapies in human gastric cancer.
PVT1 expression is increased in human gastric cancer tissues and correlates with poor prognosis
Correlation between PVT-1 expression and clinicopathological characteristics of gastric cancer
Chi-squared test P-value
High no. cases
Low no. cases
To explore the relationship between PVT1 expression and GC patients’ prognosis, we attempted to assess the correlation between PVT1 expression and clinical outcomes. The median expression for PVT1 in tumor tissues was used to divide the samples into high (above the median, n = 40) and low (below the median, n = 40) PVT1 expression group. Kaplan-Meier analysis and log-rank test were performed to further evaluate the effects of PVT1 expression and the clinicopathological characteristics on disease-free survival (DFS) and overall survival (OS). The results showed that 3 years of disease-free survival (DFS) for high PVT1 expression is 35.5%, while is 49.2% for low PVT1 expression. The median survival time for high PVT1 expression is 12 months, while is 28 months for low PVT1 expression (Figure 1D, Log rank p = 0.001). Moreover, 3 years of overall survival for high PVT1 expression is 35.7%, while is 48.6% for low PVT1 expression. The median survival time for high PVT1 expression is 13 months, while is 25 months for low PVT1 expression (Figure 1E, Log rank p = 0.002).
Univariate and multivariate Cox regression analyses PVT-1 for DFS or OS of patients in study cohort (n = 80)
Age (<50 years vs. >50 years)
Gender (male vs. female)
Location (Distal vs. Middle + Proximal)
Histologic differentiation (Well + Moderately vs. Poorly + Undifferentiated)
Invasion depth (T1 + T2 vs. T3 + T4)
TNM stage (I + II vs. III + IV)
Lymphatic metastasis (Yes vs. No.)
Regional lymph nodes (PN2+ PN3 vs. PN0+ PN1)
Distant metastasis (No vs. Yes)
Expression of PVT1 (High vs. Low)
TNM stage (I + II vs. III + IV)
Lymphatic metastasis (No vs. Yes)
Regional lymph nodes (PN0+ PN1 vs. PN2+ PN3)
Distant metastasis (No vs. Yes)
Expression of PVT1 (High vs. Low)
Amplification of a region on chromosome 8q24 is one of the most frequent events in carcinomas. The well-established oncogene MYC maps to this locus and likely contributes to the pathophysiology of cancers in which it is amplified. However, the PVT1 transcript also maps to this region and has been implicated in cancer pathophysiology as well. Several published reports have revealed that aberrant PVT-1 expression caused by copynumber amplification of chromosome 8q24 [28,29]. To explore the relationship between PVT1 and 8q24 in GC, we checked the genomic amplification of PVT1-MYC region in 30 pairs GC tumor samples by qPCR. As shown in Additional file 2: Figure S2, Copy-numbers of 8q24 and PVT1 expression were positively correlated in GC tissues, and Copy-numbers of 8q24 and MYC expression were also positively correlated in GC tissues. These findings showed that 8q24 copy-number gain promoted PVT-1 expression in GC.
Knockdown PVT1 inhibits gastric cancer cell proliferation in vitro
The impact of PVT1 on tumorigenesis in vivo
PVT1 is associated with EZH2
PVT1 is required to target EZH2 occupancy and activity to epigenetically regulate the expression of p15 and p16
We then sought to determine the functional relevance of the association between PVT1 and EZH2. We asked whether EZH2 was involved in the repression of p15 and p16. The effectiveness of EZH2 and SUZ12 siRNA were presented in Additional file 3: Figure S1C. Analysis with qRT-PCR and western blotting confirmed that the expression of PRC2 target genes p15 and p16  were increased when EZH2 was knockdown in SGC-7901 and BGC-823 cell lines (Figure 5B). Furthermore, p15 and p16 mRNA levels were also increased when SUZ12 (another important subunit of the PRC2 complex) was knockdown (Figure 5B).
To address whether PVT1 is involved in transcriptional repression through enrichment of EZH2 to target gene promoters, we conducted ChIP analysis in SGC-7901 and BGC-823 cell lines. ChIP assays demonstrated that knockdown of PVT1 decreased the binding of EZH2 and H3K27me3 levels across the p15 and p16 promoters compared to cells transfected with si-NC (Figure 5C). Importantly, no significant change was detected at the promoter of HOXA9, a target of polycomb  (Additional file 3: Figure S1D). These results suggest that PVT1 is required to target EZH2 occupancy and activity to epigenetically modulate the expression of p15 and p16.
PVT1 is inversely correlated with p15/p16 in GC tissues
The newly discovered lncRNAs have emerged as an important player in cellular development and human diseases [32,33]. LncRNAs demonstrate temporal and tissue-specific expression patterns, and aberrant regulation in various diseases, including cancer .
In our present study, we demonstrated that PVT1 expression was markedly increased in gastric cancer tissues compared with corresponding non-tumor tissues. The high expression level of PVT1 in GC patients was associated with deeper invasion depth and advanced TNM stage. In addition, high PVT1 expression in GC tissues was associated with a poor prognosis and could be an independent prognostic indicator. Moreover, aberrant expression of many other lncRNAs has been reported to be regarded as prognostic indicators. For example, HOTAIR expression is increased in primary breast tumors and metastases and its expression level in primary tumors is a powerful predictor of eventual metastasis and death . Our previous studies also showed that lncRNA ANRIL and HOTAIR could serve as a prognostic factor in GC [9,35]. In addition, amplification of chromosome 8q24 is one of the most frequent events in carcinomas. The well-established oncogene MYC maps to this locus and likely contributes to the pathophysiology of cancers in which it is amplified. However, the PVT1 transcript also maps to this region and has been implicated in cancer pathophysiology as well. Several published reports have revealed that aberrant PVT-1 expression caused by copynumber amplification of chromosome 8q24. Our results showed that 8q24 copy-number gain promoted PVT-1 expression in GC and suggested that PVT1 may play an important role in GC development, and may be useful as a novel prognostic marker for GC.
PVT1 has been studied in a variety of physiological and pathological processes, such as diabetic nephropathy , colorectal cancer , ovarian and breast cancers . However, the possible role and molecular mechanism of PVT1 in human gastric cancer remains to be clarified. As shown in Figures 2 and 3, our results showed that PVT1 knockdown could significantly inhibit gastric cancer cell proliferation both in vitro and in vivo. In addition, flow cytometric analysis indicated that inhibitory effect of PVT1-siRNA on proliferation of GC cells by causing obvious G1 phase arrest and inducing apoptosis, as shown in Figure 2.
Previous studies have reported that many lncRNAs recruit PRC2 complexes to target genes, and PRC2-mediated epigenetic regulation has an important role in cancer . Twenty percent of all human lncRNAs have been shown to physically associate with Polycomb Repressive Complex 2 (PRC2 complex), suggesting that lncRNAs may have a universal role in recruiting polycomb-group proteins to their target genes . In our study, cell fractionation revealed that PVT1 was mainly localized in the nucleus, suggesting the transcriptional regulation mechanism involvement (Figure 4A). Furthermore, we performed RIP with an antibody against enhancer of zeste homolog 2 (EZH2; an important subunit of the PRC2 complex). Encouragingly, the endogenous PVT1 was enriched in anti-EZH2 RNA immunoprecipitation (RIP) fraction relative to the input compared with the nonspecific IgG fraction both in SGC-7901 and BGC-823 cell lines (Figure 4B). Our results suggest that PVT1 serve as a new member of PRC2-mediated epigenetic regulation and may participate in the occurrence and development of GC.
To our knowledge, the kinase activity of Cdk/cyclin complexes is tightly modulated by a plethora of Cdk inhibitors (CKIs), which serve as brakes to halt cell cycle progression . Thus, we assessed the effect of PVT1 inhibition on the expression of several CKI family proteins involved in the G1/S checkpoint in SGC-7901 and BGC-823. After inhibition of PVT1, we observed a significantly increase in the expression of the tumor suppressor p15 and p16 (Figure 5) in transcriptional level. p15 and p16 belong to INKs family of cyclin-dependent kinase (cdk) inhibitor proteins; they bind to cycilnD either alone or when complexed to their caralytic subunit CDK4 and prevent the activation of cyclinD-CDK4 complexes, and thus control the cell cycle progression at G1 phase. Indeed, the INK4A-ARF-INK4B gene cluster is homozygously deleted or silenced in a variety of human cancers with an estimated frequency of ~ 40%, representing one of the most frequently cytogenetic events in human cancers [37-40]. Furthermore, altered expression of p15 and p16 proteins was associated with GC growth . These results indicated that PVT1 could regulate proliferation of gastric cancer cells by affecting the expression of p15 and p16.
Our study identified EZH2 as an important player in this PVT1-mediated p15 and p16 repression network because the ability of PVT1 to repress p15 and p16 was dependent on the association between PVT1 and EZH2. As shown in Figure 5B, analysis with qRT-PCR and western blotting confirmed that the expression of p15 and p16 were increased when EZH2 was knockdown. Previous studies have showed that ANRIL could epigenetically regulate p15 and p16 in Cis by binding to PRC2 . In our study, we showed high abundance binding between PVT1 and EZH2 in gastric cancer cells, and we further confirmed that PVT1 could mediate epigenetic regulation of p15 and p16 in Trans. As shown in Figure 5C, ChIP-qPCR assays determined that PVT1 was required for the EZH2 recruitment to and silencing of p15 and p16. Moreover, overexpression of EZH2 has been described in cancers including bladder , gastric , lung , and hepatocellular carcinoma . To further validate the role of EZH2 in gastric cancer, we detected the EZH2 expression in 30 pairs of gastric cancer tissues and corresponding adjacent tissues by IHC analysis and found that EZH2 was up-regulated in gastric cancer tissues, and the expression of EZH2 was positively correlated with PVT1 expression (Figure 6A). Importantly, we detected a significant G1 phase arrest after si-EZH2 transfection (Figure 6B). This was consistent with the effect of PVT1. To determine the clinical relevance of PVT1 and p15/p16, we detected p15/p16 expression in GC tissues by IHC and found inverse relationship between the expression of p15/p16 and PVT1 (Figure 6C). Our finding adds a new piece (PVT1) to p15 and p16 tumor suppressor regulatory network. And p15 and p16 act as tumor suppressors in various cancers, and aberrant methylation in p15 and p16 gene promoter region has been linked to gene downregulation of expression. And PRC2-mediated histone methylation contributes to the repression of p15 and p16. Our results explained that how p15 and p16 are specifically regulated by PRC2, due to in part through PVT1. Taken together, we identified that PVT1 played an oncogenic role in gastric cancer partly through epigenetic regulation of p15 and p16.
In a broader perspective, the identification of PVT1 as an important prognostic factor for GC patients calls our attention to exploring its functional roles. Moreover, PVT1 could regulate gastric cancer cells proliferation both in vitro and in vivo. Importantly, we first reported that PVT1 serving as a member of PRC2-mediated epigenetic regulation participated in the development of gastric cancer. Our study may provide a strategy and facilitate the development of lncRNA directed diagnostics and therapeutics against this deadly disease.
Materials and methods
Three gastric cancer cell lines (AGS, SGC-7901, BGC-823), and a normal gastric epithelium cell line (GES-1) were purchased from the Institute of Biochemistry and Cell Biology of the Chinese Academy of Sciences (Shanghai, China). Cells were cultured in RPMI 1640 or DMEM with 10% FBS (Gibco), and cultured at 37°C with 5% CO2.
Tissue samples and clinical data collection
Human gastric cancer specimens were obtained from the First Affiliated Hospital of Nanjing Medical University. This study was approved by Research Ethics Committee of Nanjing Medical University (Nanjing, Jiangsu, PR China). Written informed consent was obtained from all patients. Corresponding normal gastric tissue samples were taken from tissues that were located 5 cm away from tumor margin. The characteristics of the patients were summarized in Table 1.
RNA extraction and qRT-PCR analyses
Total RNA was extracted from gastric cancer tissues or cells by using TRIzol reagent (Invitrogen), according to the manufacturer’s protocol. RNA was reverse transcribed to cDNA by using a Reverse Transcription Kit (Takara, Dalian, China). Real-time PCR was performed with SYBR Green (Takara, Dalian China). GAPDH was used as reference for mRNA or lncRNAs. Each sample was analyzed in triplicate. The primers were listed in Additional file 4: Table S1.
Gastric cancer cells were transfected with siRNA by using Lipofectamine 2000 (Invitrogen, USA), according to the manufacturer’s protocol. The cells were incubated for 48 h before use in assays. The siRNA sequences were listed in Additional file 4: Table S1. The shRNA PVT1 (CCCAACAGGAGGACAGCTT) was cloned into pENTR™/U6 vector.
Cell proliferation assays
Cell proliferation was tested with MTT kit (Sigma) according to the manufacturer’s instruction. For colony formation assay, a certain number of transfected cells were placed in each well of a six-well plate and maintained in proper media containing 10% FBS for two weeks, during which the medium was replaced every 4 days. Colonies were then fixed with methanol and stained with 0.1% crystal violet (Sigma) in PBS for 10 minutes. Colony formation was determined by counting the number of stained colonies.
Transfected cells were harvested after 48 h transfection. After the double staining with fluorescein isothiocyanate (FITC)-Annexin V and propidium iodide was done by the FITC Annexin V Apoptosis Detection Kit (BD Biosciences) according to the manufacturer’s recommendations. The cells were analyzed with a flow cytometry (FACScan; BD Biosciences) equipped with a Cell Quest software (BD Biosciences). Cells were discriminated into viable cells, dead cells, early apoptotic cells, and apoptotic cells, and then the relative ratio of early apoptotic cells were compared with control transfection from each experiment. Cells for cell-cycle analysis were stained with propidium oxide by the CycleTEST PLUS DNA Reagent Kit (BD Biosciences) following the protocol and analyzed by FACScan. The percentage of the cells in G0–G1, S, and G2–M phase were counted and compared.
Western blot assay and antibodies
Cells protein lysates were separated by 15% SDS-polyacrylamide gel electrophoresis (SDS-PAGE) transferred to 0.22 μm NC membranes (Sigma) and incubated with specific antibodies. GAPDH antibody was used as control. Autoradiograms were quantified by densitometry (Quantity One software; Bio-Rad). Anti-p15 and anti-p16 were purchased from Santa Cruz Biotechnology, Inc. Anti-Ki67 was purchased from Santa Cruz Biotechnology.
Subcellular fractionation location
The separation of nuclear and cytosolic fractions was performed using the PARIS Kit (Life Technologies, Carlsbad, CA, USA) according to the manufacturer’s instructions.
RNA immunoprecipitation (RIP)
RNA immunoprecipitation(RIP) experiments were performed by using a Magna RIP™ RNA-Binding Protein Immunoprecipitation Kit (Millipore, USA) according to the manufacturer’s instructions. Antibody for RIP assays of EZH2 was from Abcam.
Chromatin immunoprecipitation (ChIP) assays
ChIP assays were performed using EZ-CHIP KIT according to the manufacturer’s instruction (Millipore, USA). EZH2 antibody was obtained from Abcam. H3 trimethyl Lys 27 antibody was from Millipore. The ChIP primer sequences were listed in Additional file 4: Table S1. Quantification of immunoprecipitated DNA was performed using qPCR with SYBR Green Mix (Takara). ChIP data was calculated as a percentage relative to the input DNA by the equation 2[Input Ct − Target Ct] × 0.1 × 100.
Animal work was performed according to the procedures as previously described . 5-week-old male athymic BALB/c mice were maintained under specific pathogen-free conditions and manipulated according to protocols approved by the Shanghai Medical Experimental Animal Care Commission. SGC-7901 cells transfected with Scramble or shPVT1 were harvested at a concentration of 2 × 107 cells/ml. Of the suspending cells, 0.1 ml was subcutaneously injected into the flanks of the nude mouse, one injection per mouse. Tumor growth was monitored, and tumor sizes and weights were measured every two days. Tumor volume was calculated using the formula, volume = (length × width2 × 0.5). Sixteen days after injection, the mice were killed and tumor weights were measured and used for further analysis. The primary tumors were excised and tumor tissues were used to perform qRT-PCR analysis of PVT1 expression levels and immunostaining analysis of Ki-67 protein expression.
The primary tumors were immunostained for Ki-67 as previously described .
All statistical analyses were performed by using SPSS 20.0 software (IBM, SPSS, USA). The significance of differences between groups was estimated by Student’s t-test, χ2 test or Wilcoxon test, as appropriate. DFS and OS rates were calculated by the Kaplan-Meier method with the log-rank test applied for comparison. Survival data were evaluated using univariate and multivariate Cox proportional hazards model. Variables with a value of p < 0.05 in univariate analysis were used in subsequent multivariate analysis on the basis of Cox regression analyses. Two-sided p-values were calculated, and a probability level of 0.05 was chosen for statistical significance.
This work was supported by grants from the National Natural Science Foundation of China (No.81272601), the Key Clinical Medicine Technology Foundation of Jiangsu Province (No.BL2014096) and the Medical Key Talented Person Foundation of the Jiangsu Provincial Developing Health Project (No.RC2011080).
- Herszenyi L, Tulassay Z. Epidemiology of gastrointestinal and liver tumors. Eur Rev Med Pharmacol Sci. 2010;14(4):249–58.PubMedGoogle Scholar
- Catalano V, Labianca R, Beretta GD, Gatta G, de Braud F, Van Cutsem E. Gastric cancer. Crit Rev Oncol Hematol. 2009;71(2):127–64.View ArticlePubMedGoogle Scholar
- Amaral PP, Mattick JS. Noncoding RNA in development. Mamm Genome. 2008;19(7-8):454–92.View ArticlePubMedGoogle Scholar
- Dinger ME, Amaral PP, Mercer TR, Pang KC, Bruce SJ, Gardiner BB, et al. Long noncoding RNAs in mouse embryonic stem cell pluripotency and differentiation. Genome Res. 2008;18(9):1433–45.View ArticlePubMed CentralPubMedGoogle Scholar
- Rinn JL, Kertesz M, Wang JK, Squazzo SL, Xu X, Brugmann SA, et al. Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs. Cell. 2007;129(7):1311–23.View ArticlePubMed CentralPubMedGoogle Scholar
- Yuan SX, Yang F, Yang Y, Tao QF, Zhang J, Huang G, et al. Long noncoding RNA associated with microvascular invasion in hepatocellular carcinoma promotes angiogenesis and serves as a predictor for hepatocellular carcinoma patients’ poor recurrence-free survival after hepatectomy. Hepatology. 2012;56(6):2231–41.View ArticlePubMedGoogle Scholar
- Ji P, Diederichs S, Wang W, Boing S, Metzger R, Schneider PM, et al. MALAT-1, a novel noncoding RNA, and thymosin beta4 predict metastasis and survival in early-stage non-small cell lung cancer. Oncogene. 2003;22(39):8031–41.View ArticlePubMedGoogle Scholar
- Yang F, Bi J, Xue X, Zheng L, Zhi K, Hua J, et al. Up-regulated long non-coding RNA H19 contributes to proliferation of gastric cancer cells. FEBS J. 2012;279(17):3159–65.View ArticlePubMedGoogle Scholar
- Zhang EB, Kong R, Yin DD, You LH, Sun M, Han L, et al. Long noncoding RNA ANRIL indicates a poor prognosis of gastric cancer and promotes tumor growth by epigenetically silencing of miR-99a/miR-449a. Oncotarget. 2014;5(8):2276–92.PubMed CentralPubMedGoogle Scholar
- Feng J, Bi C, Clark BS, Mady R, Shah P, Kohtz JD. The Evf-2 noncoding RNA is transcribed from the Dlx-5/6 ultraconserved region and functions as a Dlx-2 transcriptional coactivator. Genes Dev. 2006;20(11):1470–84.View ArticlePubMed CentralPubMedGoogle Scholar
- Martianov I, Ramadass A, Serra Barros A, Chow N, Akoulitchev A. Repression of the human dihydrofolate reductase gene by a non-coding interfering transcript. Nature. 2007;445(7128):666–70.View ArticlePubMedGoogle Scholar
- Gupta RA, Shah N, Wang KC, Kim J, Horlings HM, Wong DJ, et al. Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis. Nature. 2010;464(7291):1071–6.View ArticlePubMed CentralPubMedGoogle Scholar
- Beltran M, Puig I, Pena C, Garcia JM, Alvarez AB, Pena R, et al. A natural antisense transcript regulates Zeb2/Sip1 gene expression during Snail1-induced epithelial-mesenchymal transition. Genes Dev. 2008;22(6):756–69.View ArticlePubMed CentralPubMedGoogle Scholar
- Tripathi V, Ellis JD, Shen Z, Song DY, Pan Q, Watt AT, et al. The nuclear-retained noncoding RNA MALAT1 regulates alternative splicing by modulating SR splicing factor phosphorylation. Mol Cell. 2010;39(6):925–38.View ArticlePubMed CentralPubMedGoogle Scholar
- Yoon JH, Abdelmohsen K, Srikantan S, Yang X, Martindale JL, De S, et al. LincRNA-p21 suppresses target mRNA translation. Mol Cell. 2012;47(4):648–55.View ArticlePubMed CentralPubMedGoogle Scholar
- Kotake Y, Nakagawa T, Kitagawa K, Suzuki S, Liu N, Kitagawa M, et al. Long non-coding RNA ANRIL is required for the PRC2 recruitment to and silencing of p15(INK4B) tumor suppressor gene. Oncogene. 2011;30(16):1956–62.View ArticlePubMed CentralPubMedGoogle Scholar
- Zhang EB, Yin DD, Sun M, Kong R, Liu XH, You LH, et al. P53-regulated long non-coding RNA TUG1 affects cell proliferation in human non-small cell lung cancer, partly through epigenetically regulating HOXB7 expression. Cell Death Dis. 2014;5:e1243.View ArticlePubMed CentralPubMedGoogle Scholar
- Margueron R, Reinberg D. The Polycomb complex PRC2 and its mark in life. Nature. 2011;469(7330):343–9.View ArticlePubMed CentralPubMedGoogle Scholar
- Cao R, Wang L, Wang H, Xia L, Erdjument-Bromage H, Tempst P, et al. Role of histone H3 lysine 27 methylation in Polycomb-group silencing. Science. 2002;298(5595):1039–43.View ArticlePubMedGoogle Scholar
- Raman JD, Mongan NP, Tickoo SK, Boorjian SA, Scherr DS, Gudas LJ. Increased expression of the polycomb group gene, EZH2, in transitional cell carcinoma of the bladder. Clin Cancer Res. 2005;11(24 Pt 1):8570–6.View ArticlePubMedGoogle Scholar
- Matsukawa Y, Semba S, Kato H, Ito A, Yanagihara K, Yokozaki H. Expression of the enhancer of zeste homolog 2 is correlated with poor prognosis in human gastric cancer. Cancer Sci. 2006;97(6):484–91.View ArticlePubMedGoogle Scholar
- Watanabe H, Soejima K, Yasuda H, Kawada I, Nakachi I, Yoda S, et al. Deregulation of histone lysine methyltransferases contributes to oncogenic transformation of human bronchoepithelial cells. Cancer Cell Int. 2008;8:15.View ArticlePubMed CentralPubMedGoogle Scholar
- Liu Y, Liu T, Bao X, He M, Li L, Yang X. Increased EZH2 expression is associated with proliferation and progression of cervical cancer and indicates a poor prognosis. Int J Gynecol Pathol. 2014;33(3):218–24.View ArticlePubMedGoogle Scholar
- Sudo T, Utsunomiya T, Mimori K, Nagahara H, Ogawa K, Inoue H, et al. Clinicopathological significance of EZH2 mRNA expression in patients with hepatocellular carcinoma. Br J Cancer. 2005;92(9):1754–8.View ArticlePubMed CentralPubMedGoogle Scholar
- Guttman M, Amit I, Garber M, French C, Lin MF, Feldser D, et al. Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals. Nature. 2009;458(7235):223–7.View ArticlePubMed CentralPubMedGoogle Scholar
- Alvarez ML, DiStefano JK. Functional characterization of the plasmacytoma variant translocation 1 gene (PVT1) in diabetic nephropathy. PLoS One. 2011;6(4):e18671.View ArticlePubMed CentralPubMedGoogle Scholar
- Takahashi Y, Sawada G, Kurashige J, Uchi R, Matsumura T, Ueo H, et al. Amplification of PVT-1 is involved in poor prognosis via apoptosis inhibition in colorectal cancers. Br J Cancer. 2014;110(1):164–71.View ArticlePubMed CentralPubMedGoogle Scholar
- Guan Y, Kuo WL, Stilwell JL, Takano H, Lapuk AV, Fridlyand J, et al. Amplification of PVT1 contributes to the pathophysiology of ovarian and breast cancer. Clin Cancer Res. 2007;13(19):5745–55.View ArticlePubMedGoogle Scholar
- Riquelme E, Suraokar MB, Rodriguez J, Mino B, Lin HY, Rice DC, et al. Frequent coamplification and cooperation between C-MYC and PVT1 oncogenes promote malignant pleural mesothelioma. J Thorac Oncol. 2014;9(7):998–1007.View ArticlePubMedGoogle Scholar
- Khalil AM, Guttman M, Huarte M, Garber M, Raj A, Rivea Morales D, et al. Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression. Proc Natl Acad Sci U S A. 2009;106(28):11667–72.View ArticlePubMed CentralPubMedGoogle Scholar
- Cao R, Zhang Y. SUZ12 is required for both the histone methyltransferase activity and the silencing function of the EED-EZH2 complex. Mol Cell. 2004;15(1):57–67.View ArticlePubMedGoogle Scholar
- Wilusz JE, Sunwoo H, Spector DL. Long noncoding RNAs: functional surprises from the RNA world. Genes Dev. 2009;23(13):1494–504.View ArticlePubMed CentralPubMedGoogle Scholar
- Maass PG, Luft FC, Bahring S. Long non-coding RNA in health and disease. J Mol Med (Berl). 2014;92(4):337–46.View ArticleGoogle Scholar
- Mercer TR, Dinger ME, Mattick JS. Long non-coding RNAs: insights into functions. Nat Rev Genet. 2009;10(3):155–9.View ArticlePubMedGoogle Scholar
- Liu XH, Sun M, Nie FQ, Ge YB, Zhang EB, Yin DD, et al. Lnc RNA HOTAIR functions as a competing endogenous RNA to regulate HER2 expression by sponging miR-331-3p in gastric cancer. Mol Cancer. 2014;13:92.View ArticlePubMed CentralPubMedGoogle Scholar
- Lim S, Kaldis P. Cdks, cyclins and CKIs: roles beyond cell cycle regulation. Development. 2013;140(15):3079–93.View ArticlePubMedGoogle Scholar
- Moselhy SS, Kumosani TA, Kamal IH, Jalal JA, Abdul Jabaar HS, Dalol A: Hypermethylation of P15, P16, and E-cadherin genes in ovarian cancer. Toxicol Ind Health. 2013.Google Scholar
- Do Nascimento Borges B, Burbano RM, Harada ML. Analysis of the methylation patterns of the p16 INK4A, p15 INK4B, and APC genes in gastric adenocarcinoma patients from a Brazilian population. Tumour Biol. 2013;34(4):2127–33.View ArticlePubMedGoogle Scholar
- Fujiwara-Igarashi A, Goto-Koshino Y, Mochizuki H, Maeda S, Fujino Y, Ohno K, et al. Simultaneous inactivation of the p16, p15 and p14 genes encoding cyclin-dependent kinase inhibitors in canine T-lymphoid tumor cells. J Vet Med Sci. 2013;75(6):733–42.View ArticlePubMedGoogle Scholar
- Qian X, Durkin ME, Wang D, Tripathi BK, Olson L, Yang XY, et al. Inactivation of the Dlc1 gene cooperates with downregulation of p15INK4b and p16Ink4a, leading to neoplastic transformation and poor prognosis in human cancer. Cancer Res. 2012;72(22):5900–11.View ArticlePubMedGoogle Scholar
- Matsumoto Y, Marusawa H, Kinoshita K, Niwa Y, Sakai Y, Chiba T. Up-regulation of activation-induced cytidine deaminase causes genetic aberrations at the CDKN2b-CDKN2a in gastric cancer. Gastroenterology. 2010;139(6):1984–94.View ArticlePubMedGoogle Scholar
This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.